PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_13130V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 267aa    MW: 29272.1 Da    PI: 5.7616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_13130V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.2e-172467249
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                         ykGVr+++ +g+Wv+eIr p++   + r++lg+f+tae+Aa a++ a
  Pp3c21_13130V3.2.p 24 LYKGVRRRP-WGSWVSEIRKPKS---KSRIWLGSFDTAEMAATAYDTA 67
                        69*******.**********843...4*******************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.36E-292382No hitNo description
PfamPF008471.5E-102367IPR001471AP2/ERF domain
SMARTSM003807.4E-322486IPR001471AP2/ERF domain
PROSITE profilePS5103219.8092480IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-282481IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-182481IPR016177DNA-binding domain
PRINTSPR003679.7E-102536IPR001471AP2/ERF domain
PRINTSPR003679.7E-104763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MIGGSQAQQE TKLGTELGDA NHPLYKGVRR RPWGSWVSEI RKPKSKSRIW LGSFDTAEMA  60
ATAYDTALVL RGADAQLNFP NLASSLPRPQ DLSDKSIQAA AIEAAQCISR QMKPQSRDRS  120
RCHTFATNSR THSSHQRDQG IDSSLDHQHL PGNGTQYNLA TFTSGRNHHL PQHMSRSCGH  180
EDVIPLTSAP ASSDSDLCWL PNSSASCTDI SDVEMEGEDR ASPEYPSSFM EVDQMPNSMA  240
DSLQSSANDS DEGTSAYSWE PRLWSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1620861081Ethylene-responsive transcription factor ERF096
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.151630.0gametophore
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358932.10.0ethylene-responsive transcription factor TINY-like isoform X2
TrEMBLA0A2K1IRR90.0A0A2K1IRR9_PHYPA; Uncharacterized protein
STRINGPP1S132_34V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-29ERF family protein