PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_13480V3.2.p
Common NamePHYPADRAFT_231478
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family E2F/DP
Protein Properties Length: 673aa    MW: 73004.9 Da    PI: 9.1447
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_13480V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.64.4e-23113178171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         rk+ksL+ll+++fl+l+ ++e + ++l+e+a++L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  Pp3c21_13480V3.2.p 113 RKDKSLGLLCENFLNLYGTEEGECISLDEAASRL---GV--ERRRIYDIVNVLESIEVLIRKAKNRYTWHG 178
                         79****************9999************...**..******************999*******98 PP
2E2F_TDP71.59.7e-23258338171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                         r+eksL+ll+qkf++l+  s++++v+l+++a+ L+ +     + k+k+RR+YDi+N+L++l+liek     ++k+++rw g
  Pp3c21_13480V3.2.p 258 RREKSLGLLSQKFVQLFLVSQSQVVSLEDAARLLLGDckdasKLKTKVRRLYDIANILSSLQLIEKthmaeNRKPAFRWLG 338
                         689***************************************99***********************999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.3E-27108179IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.78E-15112177IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-29113178IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.4E-20114178IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.7E-24254339IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.3E-33258338IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-19260338IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.31E-12260339IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MNSPLTKQPR QSPIQSRTFA NRDRMPPLTP NTRSDVNTAR GRVSLNSEPS ITDSEKENRV  60
HRPGGSIKRS TNSSSLIKYE VLNESTRSAS PSIGTVNHHQ SDADTRAHSS YNRKDKSLGL  120
LCENFLNLYG TEEGECISLD EAASRLGVER RRIYDIVNVL ESIEVLIRKA KNRYTWHGST  180
RLPQALQTMK EAALRVYGLG EFANTSADES RPTIVASNCA SSDDEDEERK TLPSQESEAC  240
ASVQSQQSSA PKAKADCRRE KSLGLLSQKF VQLFLVSQSQ VVSLEDAARL LLGDCKDASK  300
LKTKVRRLYD IANILSSLQL IEKTHMAENR KPAFRWLGTK DDLVGPATRM RISGNYVQSP  360
TVNTIPACSS FSFDRTKRGL KRGGTDAPRV EPNSAKRTAL KPLQPRDPNV MTPYSRDIIN  420
KPVPLHPRAS QADSSVSDLK ILSVAPSPHN AADSPTAPAT TAFSSPIRTT GWREWNDGVQ  480
IHATPTITPW SAQCCDHAGS SNAACPSSNS TLTCSQGGCT PVISQAPGMG SPAVMAGGGV  540
RNCRTCLSRV SYDNLYPFRP PGSLFNPFLP SPPFPMHPQL AAAGFSLAPP GLAPEQSLGL  600
DSTRAQDCSV HRTDNGVAAA AVLQYHNETL GHMFAQYVEA WKSWYLQAAS VANPSSFQTP  660
PPVRPGTPQS PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A4e-461133304228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358851.10.0transcription factor E2F7-like isoform X2
TrEMBLA9SXC90.0A9SXC9_PHYPA; Predicted protein
STRINGPP1S132_65V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.15e-56DP-E2F-like 1
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]