PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c21_13490V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 1086aa MW: 122365 Da PI: 5.0448

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c21_13490V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.6	1.8e-09	142	225	2	80
trihelix 2 WtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 W e l+L+ a +e e++++ +++ +W ++ +++ + + rs+ C ekw l+ ++k+ik+ e++ +++ s + Pp3c21_13490V3.2.p 142 WDVLEMLVLVSAMKEYAETVGDHPledhiSEQEKWHSIESYCLGQLVLRSALDCSEKWACLSVEFKRIKDFESNMVQDQISYWE 225 7777999999999999999997644555699******************************************98777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50808	9.979	362	438	IPR003656	Zinc finger, BED-type
SuperFamily	SSF53098	2.05E-37	558	1040	IPR012337	Ribonuclease H-like domain
Pfam	PF05699	1.1E-10	963	1036	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1086 aa Download sequence Send to blast
MKLCGEGWVL GFIAIFGSLQ QLMENGVDAE AITNDHLSGG LVDVIGTTEE LEMDVRSDKM 60 HEVQELGNGR HEQFERDDDH VENSVHDAMM LEETRGGIGA EHQESGVMEG EEDHMGFDED 120 TRIDGIETSK GQVDKHYKEG PWDVLEMLVL VSAMKEYAET VGDHPLEDHI SEQEKWHSIE 180 SYCLGQLVLR SALDCSEKWA CLSVEFKRIK DFESNMVQDQ ISYWEMTYDE RRNFHLPGDF 240 SQEVYNALWH WDDRDRIGEI GAPVILEDEI NIIKERSSFG SIVRTRKRSD RGEYQVSRKV 300 SRGEGSIEPS FLGSQLLMLD NQQSSLALVE TPQEILPSED DVVWNAQFSQ LRANQNFWAP 360 HGRASATWAF YVVNDNSEPD SARPQQMRCA ICHPAQQEHR PNSATRVRKG VVTYNKQHGT 420 TSMKKHVAQE HGDIFTKYKA TRMSNATTRA EFQHSRRMKN DPLPSIISDI LYNQNSNKKF 480 DPAQERLLED LVLYVAKGCH PMSVVENVWL KKLVMNRQFG RVSFPSSRQL TDEVIPRVVS 540 QIIEKNILPS LRGCVSATVT FDLWMSRRGV NSIATVVHFI NESWETCHVT IGVLEASVIA 600 GEELVMEVKD LLSSFNLMDK IIAFVVKDDD SRLTSLAEAL SKKVVCSPLQ LSEPYTGTCF 660 GNVLSKACEN TTTDEKACDG LRAVSIEAAI SSLRRSISST SRSAKRRLEW MKACADVGLR 720 PRKLRAPVKG RFASKVILCQ EALDYQPVLQ LCSASQSDGM FFDVPSVETW AIAKAVTVAL 780 NPVLQQCVMN RSKGYWLLSD AIAAALSLYL QLHKETINRS LPDPKLDPHF ESELEVLQVR 840 LVQEVMSTLS LSLNFTLDYS AKHSHNMLAL MLDPRYKGLS LLKDYVGRDM ALAVVAEVDN 900 RALLPCLVTV FKQLNPSSVE NVSALSPTSK DFFDENSLFG SSASHDEAIV GHLKAELSLF 960 RRLRIDSKEC ENPLAWWKDR EVQFPNVGFL ARQILGIVGS QVETERIFSI VGVITEIHRR 1020 HLGTDNLDKL VLIRENWKDD SRAGSEYPAA GHKMVDSVLE NYLLGEENIL DEHEDLLMEA 1080 VLFDD*

Sequence ? help Back to Top

Protein Sequence Length: 1086 aa Download sequence Send to blast

MKLCGEGWVL GFIAIFGSLQ QLMENGVDAE AITNDHLSGG LVDVIGTTEE LEMDVRSDKM  60
HEVQELGNGR HEQFERDDDH VENSVHDAMM LEETRGGIGA EHQESGVMEG EEDHMGFDED  120
TRIDGIETSK GQVDKHYKEG PWDVLEMLVL VSAMKEYAET VGDHPLEDHI SEQEKWHSIE  180
SYCLGQLVLR SALDCSEKWA CLSVEFKRIK DFESNMVQDQ ISYWEMTYDE RRNFHLPGDF  240
SQEVYNALWH WDDRDRIGEI GAPVILEDEI NIIKERSSFG SIVRTRKRSD RGEYQVSRKV  300
SRGEGSIEPS FLGSQLLMLD NQQSSLALVE TPQEILPSED DVVWNAQFSQ LRANQNFWAP  360
HGRASATWAF YVVNDNSEPD SARPQQMRCA ICHPAQQEHR PNSATRVRKG VVTYNKQHGT  420
TSMKKHVAQE HGDIFTKYKA TRMSNATTRA EFQHSRRMKN DPLPSIISDI LYNQNSNKKF  480
DPAQERLLED LVLYVAKGCH PMSVVENVWL KKLVMNRQFG RVSFPSSRQL TDEVIPRVVS  540
QIIEKNILPS LRGCVSATVT FDLWMSRRGV NSIATVVHFI NESWETCHVT IGVLEASVIA  600
GEELVMEVKD LLSSFNLMDK IIAFVVKDDD SRLTSLAEAL SKKVVCSPLQ LSEPYTGTCF  660
GNVLSKACEN TTTDEKACDG LRAVSIEAAI SSLRRSISST SRSAKRRLEW MKACADVGLR  720
PRKLRAPVKG RFASKVILCQ EALDYQPVLQ LCSASQSDGM FFDVPSVETW AIAKAVTVAL  780
NPVLQQCVMN RSKGYWLLSD AIAAALSLYL QLHKETINRS LPDPKLDPHF ESELEVLQVR  840
LVQEVMSTLS LSLNFTLDYS AKHSHNMLAL MLDPRYKGLS LLKDYVGRDM ALAVVAEVDN  900
RALLPCLVTV FKQLNPSSVE NVSALSPTSK DFFDENSLFG SSASHDEAIV GHLKAELSLF  960
RRLRIDSKEC ENPLAWWKDR EVQFPNVGFL ARQILGIVGS QVETERIFSI VGVITEIHRR  1020
HLGTDNLDKL VLIRENWKDD SRAGSEYPAA GHKMVDSVLE NYLLGEENIL DEHEDLLMEA  1080
VLFDD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.11709	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024359895.1	0.0	uncharacterized protein LOC112274515 isoform X1
TrEMBL	A0A2K1IRU1	0.0	A0A2K1IRU1_PHYPA; Uncharacterized protein
STRING	PP1S299_56V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	7e-14	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c21_13490V3.2.p