PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_13740V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 468aa    MW: 49716.6 Da    PI: 7.1511
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_13740V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.4e-07374423147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Pp3c21_13740V3.1.p 374 RRPFSVSEVEALVHAVEKLGTGRWRDVKLRAFeqaKHRTYVDLKDKWKTL 423
                         678999********************9888888**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.638369428IPR017930Myb domain
SMARTSM007178.0E-7373426IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10374424IPR009057Homeodomain-like
SuperFamilySSF466896.92E-15375455IPR009057Homeodomain-like
CDDcd116606.72E-16375425No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEARIRRVGG GFPGYDGPAL PRGLRSQRQG RGGDAAKREA KTLGRGGVFE LLATVAGQIL  60
QGAGGEDGSR TNRGDREGAK GELEVGVDCV RASLESRKRS TSGGKPRSSG DGRAKGEGVA  120
HVGWIGDVCG EGCNDVESTS GVVRTPSQEE ERTSSVKDVA VDESNATAAR MDASAMEDVW  180
WMWTMRADGR VGVVAQVMSP LLGGDMSAAQ GGGGSGSPSL EAKETGVVWE TDGGRRDVER  240
VVVEEGCEGG KREELVLEVR DGARKAAEAE MVGDAAVVAM QASSNSCEVS CEELEEWKNA  300
LACCKADASR RGWKEADSGC GSPRSCCQES VVAGSGAMIV HPGVGTGDNA GGMALVPMRN  360
KMSRALDNGK RRVRRPFSVS EVEALVHAVE KLGTGRWRDV KLRAFEQAKH RTYVDLKDKW  420
KTLVHTARIA PHQRRGEPVP QELLERVTRA HAFWTAHAAK QQAELDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-463604643107Telomere binding protein TBP1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402293.14e-88uncharacterized protein LOC112295236 isoform X2
TrEMBLA0A2K1IRV20.0A0A2K1IRV2_PHYPA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.14e-47TRF-like 2