PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_15150V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 478aa    MW: 53059.3 Da    PI: 7.6207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_15150V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44.1e-16269316355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++h  +ErrRR+++N++f  Lrel+P+       K++Ka+iL  A+eY+k+Lq
  Pp3c21_15150V3.3.p 269 ASHVLAERRRREKLNDRFVALRELIPNV-----SKMDKASILGVAIEYVKELQ 316
                         68999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.0E-23181IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.74E-16264320No hitNo description
SuperFamilySSF474593.53E-20264328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.879266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-13269316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-20270327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MSCNFAEGVG LVGRAAADGR YAWQCKTNEI STKLFTRALL AKSASIQTIF CFPLMDGVVE  60
FGTTEHVPED SNIVQHVSSF FMERKRHSHP QHSVTTEQKH EHSKNSPQQS ENVVHCNQLA  120
EYGASSKKAK LSSSQMAEVE NETSMNRVNS LLDPTSQEQR TYTHLFQQNQ GSDSRLYKGE  180
NRGKNQSGVL PGRVFSSWKK NSTPSQKSQK AENRQKILKE ALFRVTRLYD GAWKNKVDSS  240
FIFTDRAVED RTSNLGSQKP VPSSEETSAS HVLAERRRRE KLNDRFVALR ELIPNVSKMD  300
KASILGVAIE YVKELQSQLR ALESNNTQDG TPRQFGTANE DATITNTTRE HLECAGVVHV  360
IDEDKAATSE CTITEESFKP GHVNVRVSMN NDVAIVKLHC PYRQTLLVDV LQSLNDLEFD  420
VCGVRSSISD DILSTVLEAK LRSASDGSSP TIIEVEKTLH RAAAGLLKER ASASSLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-16266328466Transcription factor MYC2
5gnj_B8e-16266328466Transcription factor MYC2
5gnj_E8e-16266328466Transcription factor MYC2
5gnj_F8e-16266328466Transcription factor MYC2
5gnj_G8e-16266328466Transcription factor MYC2
5gnj_I8e-16266328466Transcription factor MYC2
5gnj_M8e-16266328466Transcription factor MYC2
5gnj_N8e-16266328466Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274279ERRRRE
2275280RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.106371e-131protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359289.10.0transcription factor GLABRA 3-like isoform X3
RefseqXP_024359290.10.0transcription factor GLABRA 3-like isoform X3
TrEMBLA0A2K1IS250.0A0A2K1IS25_PHYPA; Uncharacterized protein
STRINGPP1S167_124V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.15e-25bHLH family protein