PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_16260V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 409aa    MW: 46240.4 Da    PI: 9.9927
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_16260V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.6e-19131218196
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k++++s+v++  +l lp +f+++h+    e+   tlede+g++We  +  rk++    l++GW++F  +++L +gD ++F+l++  +f 
  Pp3c21_16260V3.2.p 131 FVKAMLHSHVSSCFWLGLPHHFCKKHMPY--EDERFTLEDEDGKEWECLYLARKTG----LSGGWRGFSLDHDLVDGDCCIFELVRPLRF- 214
                         89************************633..4457***************656665....***********************9885555. PP

                         .EEEE CS
                  B3  92 lvvkv 96 
                          ++ +
  Pp3c21_16260V3.2.p 215 -KIYF 218
                         .5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-26127222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-21127220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-27129220No hitNo description
PfamPF023621.1E-16131219IPR003340B3 DNA binding domain
PROSITE profilePS5086313.31131222IPR003340B3 DNA binding domain
SMARTSM010199.6E-24131222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MAVDKKAPAL SYEEERKQRV MENKRIMQEL GLVDLSNELK KLKKDSAKKP VKRKMLVQDV  60
AGLESRRSSR VAAKPAVSYR DQLDLLPGFR ARSGTGGERQ GLPRRYLSDT VRLATIEMAE  120
EAFKAIKNPG FVKAMLHSHV SSCFWLGLPH HFCKKHMPYE DERFTLEDED GKEWECLYLA  180
RKTGLSGGWR GFSLDHDLVD GDCCIFELVR PLRFKIYFFR CSEQEDRAED VEEKRSAVKA  240
ESKKAMTEKK ASKAVTKKKP GFFEARKSNK SASKKLEVTD EEDDEYQSPK RSVNHDDSYV  300
VVASRASSRK RVEHEDDVGK CLTPPRKHYK GTKSNHLKGN QADNPIDQES VQNEVDEKGS  360
GESAAVTKTN QAGLGLSSGR VTRNSSRRSL DPLPFNLNKR RSTVGKLR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14754KKPVKRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358852.10.0B3 domain-containing protein Os06g0194400-like
TrEMBLA0A2K1ISA40.0A0A2K1ISA4_PHYPA; Uncharacterized protein
STRINGPP1S167_8V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-41B3 family protein