PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_16540V3.1.p
Common NamePHYPADRAFT_172697
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 193aa    MW: 21543.5 Da    PI: 7.9554
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_16540V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22.1e-13101142347
                 AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaai 47 
                         y+GVr ++  ++Wv eIr       ++++++lg++ taeeAa+a++
  Pp3c21_16540V3.1.p 101 YRGVRHRPELNKWVTEIRP----TaQKRKIWLGTYKTAEEAARAYD 142
                         9***************999....3346******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.476100164IPR001471AP2/ERF domain
SMARTSM003805.2E-17100163IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-14101159IPR016177DNA-binding domain
PRINTSPR003672.2E-5101112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-22101159IPR001471AP2/ERF domain
PfamPF008473.1E-9101142IPR001471AP2/ERF domain
CDDcd000181.63E-18101159No hitNo description
PRINTSPR003672.2E-5124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MPGMAPAAWC LGGVKLERLE STEMKKSIGV HKIRKDMEDR DIDLNVPYME EKQEQEQEST  60
SVSASVSASS TSAGTDGKSC RVPCDEVHYR GVSGREEEVA YRGVRHRPEL NKWVTEIRPT  120
AQKRKIWLGT YKTAEEAARA YDVGIFYTGK KIPLNFPDSM ENLPELPCGS WEEIAPFVKK  180
QAVSAAKRHR GL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.104550.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359180.11e-139dehydration-responsive element-binding protein 1F-like
TrEMBLA0A2K1IS961e-141A0A2K1IS96_PHYPA; Uncharacterized protein
STRINGPP1S373_18V6.11e-141(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-16ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]