PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_1680V3.2.p
Common NamePHYPADRAFT_89997
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 271aa    MW: 30265.6 Da    PI: 4.0823
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_1680V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.1e-0568109955
                        HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Er  R+ri   fe Lr   P+ +        +K +iL    eYI  Lq
  Pp3c21_1680V3.2.p  68 ERWQRRRIHGQFELLRAATPNsC------TDDKTSILADSHEYIERLQ 109
                        8999*****************66......678888***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-766120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-966122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.57E-568113No hitNo description
PROSITE profilePS516718.772185262IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MALGMGLPAE QCDIFDLHNY ADQEYWSDLE DLEVDEEYAV TPREFEPVVP RSSKRTYGVF  60
VNSEAVPERW QRRRIHGQFE LLRAATPNSC TDDKTSILAD SHEYIERLQR QIQELQCELD  120
ASSCFEDDLS CCEDDASSCE DDSSPWFTNE KRTVDSNPAP KSYSALSGIC SQPMVEVGRN  180
EKGLKIYVEC NNTSGLLVDI LNLLESSGMN VEQARISCQE VLFLECLGLK GETGDENDEA  240
HSECVSRLIA EEVAASLRSL IAKKAEVTLQ *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358924.10.0uncharacterized protein LOC112274024
TrEMBLA0A2K1IQD20.0A0A2K1IQD2_PHYPA; Uncharacterized protein
STRINGPP1S191_56V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.13e-11bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]