PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c21_19330V3.1.p

Common Name

PHYPADRAFT_172993

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 277aa MW: 30640.4 Da PI: 10.2419

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c21_19330V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.3	9.9e-10	222	269	3	46
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46 +WT eE ++l+++ ++ + +Wk I + + gRt+ +c+ rw + Pp3c21_19330V3.1.p 222 NWTDEETQKLAKGKIEFDERngnkaSWKVIKKNVR-GRTEDECRMRWDT 269 8********************************.*********65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.797	215	275	IPR017930	Myb domain
SuperFamily	SSF46689	6.24E-8	219	271	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-7	219	273	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-8	220	272	IPR009057	Homeodomain-like
CDD	cd00167	8.35E-8	222	271	No hit	No description
Pfam	PF00249	2.3E-8	222	269	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MPGPDSNLVV GTLPQRTEAV SAGVGRGRHT IVASTSNLRR GRRCIQITVT AAIDSVMDDP 60 MILESRLPYP ETLDKSVMAA RAREMQKERP ESAVDENGID AASGHKDVTE RGAMEATAVD 120 QCHSAGHDAT RKLRGISKSQ HAQKPGPVTV TNLQRRRQVI QVQNEGCDDD SSTEFATRGI 180 NEEAKGKAEG PKRRRGDPAG EVDWVANGKT RGEKRRKKRS PNWTDEETQK LAKGKIEFDE 240 RNGNKASWKV IKKNVRGRTE DECRMRWDTL IKTYKA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16679	0.0	protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024359747.1	0.0	uncharacterized protein LOC112274456 isoform X2
TrEMBL	A0A2K1ISL5	0.0	A0A2K1ISL5_PHYPA; Uncharacterized protein
STRING	PP1S401_18V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c21_19330V3.1.p
Entrez Gene	5947539

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]