PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_21070V3.3.p
Common NamePHYPADRAFT_89183
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 205aa    MW: 22836.8 Da    PI: 10.0697
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_21070V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.57.6e-14106148247
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                          ++GVr ++  ++Wv eIr  s   ++++++lg++ t+eeAa+a++
  Pp3c21_21070V3.3.p 106 NFRGVRHRPELNKWVTEIRPTS---QKRKIWLGTYETPEEAARAYD 148
                         58***************99942...35******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.21E-17105152No hitNo description
SMARTSM003802.8E-14106169IPR001471AP2/ERF domain
PROSITE profilePS5103215.857106166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-19106164IPR001471AP2/ERF domain
PfamPF008478.3E-10106148IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-13107162IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MNLTISSIIE QGKPKAKNCW DPCGGGKIRE QGLQLSSSIG TSRVKIELEG SKSDSSVEEE  60
SKGMRLAAKD TSGRNAYKYR NIDLNKAPST WDADEVTVSS TNDTTNFRGV RHRPELNKWV  120
TEIRPTSQKR KIWLGTYETP EEAARAYDVG IFYTKKKIPY NFEDSPKKLQ QLPIPPELPW  180
ESFAAVVKQR ATSAAKRARV PSSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.117560.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359372.11e-150ethylene-responsive transcription factor ERF039-like
RefseqXP_024359373.11e-150ethylene-responsive transcription factor ERF039-like
RefseqXP_024359375.11e-150ethylene-responsive transcription factor ERF039-like
RefseqXP_024359376.11e-150ethylene-responsive transcription factor ERF039-like
RefseqXP_024359377.11e-150ethylene-responsive transcription factor ERF039-like
RefseqXP_024359378.11e-150ethylene-responsive transcription factor ERF039-like
TrEMBLA0A2K1ISV01e-148A0A2K1ISV0_PHYPA; Uncharacterized protein
STRINGPP1S179_56V6.11e-149(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-13ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]