PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c22_17830V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 309aa MW: 37068.3 Da PI: 5.944

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c22_17830V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.2	8.1e-22	44	138	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk.........rtsessstcpyf 82 +W +e+++ i++r e+e+++ ++k++k+lWe + +km+e+gf+rs+ qCk+kw+nl +ryk +++e + +e+ ++cp+f Pp3c22_17830V3.2.p 44 QWGYHETKEFIAIRAELEKDFTQTKRNKALWELIERKMKEKGFRRSADQCKCKWKNLVNRYKGKETSEPDyeftqgkdpADPENGRQCPFF 134 7*************************************************************99988754111111111245677888999 PP trihelix 83 dqle 86 d+l+ Pp3c22_17830V3.2.p 135 DELD 138 8887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.92E-27	43	108	No hit	No description
Pfam	PF13837	1.2E-19	44	140	No hit	No description
PROSITE profile	PS50090	6.679	45	101	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGESLGALPM SMSLQVTHDM NHPDMGSLTP VRGRNLKKED RIPQWGYHET KEFIAIRAEL 60 EKDFTQTKRN KALWELIERK MKEKGFRRSA DQCKCKWKNL VNRYKGKETS EPDYEFTQGK 120 DPADPENGRQ CPFFDELDAI FKERAKNSDR LLLEYESGPR AKKKGKRSKA KSDDDDDSED 180 DDDEEESEED RVVQRKKRKG EKDNNRPRVT AEKYRANSMQ EVLEDFFHQQ QKVEEQWRES 240 VERREQERRL REQEWRDAME KLEQERIARE QMWREREEQR RIRDEARAQK RDELFTVLLT 300 KLVQDEGY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.11868	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024361201.1	0.0	trihelix transcription factor GT-3b-like
TrEMBL	A0A2K1INW8	0.0	A0A2K1INW8_PHYPA; Uncharacterized protein
STRING	PP1S100_110V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	1e-30	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c22_17830V3.2.p