PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_1800V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 404aa    MW: 43870.6 Da    PI: 5.4651
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_1800V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17104153255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++GVr++  +g+WvAeIr+p++   r+r +lg+f ta eAa a++ a++kl+g
  Pp3c22_1800V3.1.p 104 EFRGVRQRT-WGKWVAEIREPKK---RARLWLGSFSTAREAALAYDIAARKLYG 153
                        59****999.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.49E-29103163No hitNo description
Gene3DG3DSA:3.30.730.104.8E-28104161IPR001471AP2/ERF domain
PfamPF008471.4E-10104153IPR001471AP2/ERF domain
SMARTSM003803.9E-35104167IPR001471AP2/ERF domain
PROSITE profilePS5103221.641104161IPR001471AP2/ERF domain
PRINTSPR003677.7E-9105116IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-19105162IPR016177DNA-binding domain
PRINTSPR003677.7E-9127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MTVSGRTLQA ERGRGEVVIT VAKSKVSGVV NSANIGISSN FPSAHWEAIA TKTIQRIGMQ  60
LGSGGDDKLS PTSGHIEKPA RKPGKRWKKG AMKGKGGPEN AACEFRGVRQ RTWGKWVAEI  120
REPKKRARLW LGSFSTAREA ALAYDIAARK LYGSMAELNL PPSESAGIDS VPSSTPTKES  180
SSPPRVMHDV EITEHLELPR QHSLGTSASA GSSSRTSMHI GIREDHFDVE LVMADSGRAF  240
GASDARQVFP HEMVRDSRGM GEAGPSLEMG TDSSSSSQVN PPHELFSITP EFQQHRYYNL  300
QGSRLGTSLS GEYLKDIESF LNRMDDDDDY ALGSNSSLSQ STESAGGSYP PDPHWDDENL  360
GTQFLNSELE SLDSVLNEPL VPENVELWDT RDTLPPSDPS TWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-16105161360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360275.10.0AP2/ERF and B3 domain-containing protein Os05g0549800-like
TrEMBLA0A2K1ILX00.0A0A2K1ILX0_PHYPA; Uncharacterized protein
STRINGPP1S162_92V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-37ERF family protein