PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_2200V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 850aa    MW: 92583.2 Da    PI: 5.1074
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_2200V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002234256123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C++C++ F +  +L+ H + H
  Pp3c22_2200V3.1.p 234 YRCGICNEDFESAKSLNLHKKFH 256
                        9*******************998 PP
2zf-C2H2157.2e-05305324221
                        EETTTTEEESSHHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                        +C+ Cgk Fs++  L  H+r
  Pp3c22_2200V3.1.p 305 PCTECGKEFSSWKALFGHMR 324
                        5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.021234256IPR015880Zinc finger, C2H2-like
PfamPF139120.015234258IPR007087Zinc finger, C2H2
SuperFamilySSF576676.3E-9234256No hitNo description
PROSITE profilePS501579.93234256IPR007087Zinc finger, C2H2
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
SuperFamilySSF576676.3E-9299326No hitNo description
SMARTSM003550.0052304326IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18304331IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-4306326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280306326IPR007087Zinc finger, C2H2
PfamPF139125.0E-8306328IPR007087Zinc finger, C2H2
SMARTSM003550.61563585IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93563590IPR007087Zinc finger, C2H2
PfamPF139123.5E-8563587IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-6563585No hitNo description
PROSITE patternPS000280565585IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-6657684No hitNo description
PfamPF139125.2E-13661686IPR007087Zinc finger, C2H2
SMARTSM003550.43662684IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494662689IPR007087Zinc finger, C2H2
PROSITE patternPS000280664684IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MTLADGEESV DMEEKALEKA DRELDCVEMS TDQVSRGTDQ ERGMDLEQEE RRGAISVSDN  60
ARNSDPSAAC KTKEEEDFGV SVGDKERAER ENIDVVKAEL GELIERESGT EDYGHQAEVS  120
SSRGNVSVTN QDSESLIHEG SLDRPLSRPR RSHGLRKLNT AKTRSSSLSS QRSGKCSPSQ  180
DLLSGATPDS KGTRKRGEDA EEVRQFSSSE ELNGDGDRER DGDGDGDEVD GTGYRCGICN  240
EDFESAKSLN LHKKFHPQYT LRRNPKRSRK LMDQEFTVDV GAAVPVQASA PTKKTSSMSE  300
EFPKPCTECG KEFSSWKALF GHMRCHPERE WRGIQPPSEK NNPGGQGSGP HAAGGVGNHT  360
NFRRKKPSPV AQLPPPLAPP PVVTHPDDVN EKSGSFDSRR AFVAGKASDN ESDTESIEAA  420
YMSNGDRHTV MGWQTGKRSK RSRQTHRSLD AVNSAKKELS NCRDSAANMA ESNDMIEALM  480
LLQAANRSRE RLTVTSTPES HGSKSRSKSI TPESGLEAGT EEILQRERKT KMETEAVSLC  540
GDTEDGADEF DAGEQGSCAR SKYECATCKR QFKSHQALGG HRASHKKVKG CFARTNVNDG  600
GANEQSLESM DADDEEFLKS EEQFPNDFQE TSHNSEEDKS CYLTTARDDE EALYAARKAK  660
AHECSICHRV FNSGQALGGH KRCHWGGSGS GSLGANEVMS AKPVQAGQQQ QSSSRPLKES  720
VLDLNLPAPE CVEEEEIAQQ QEGEAGAAPM NYMPVPSLNF FNIINNPGRS AYGDAVGQQG  780
QGQQQQQHAA FLQGEESSSN NQVENRMEGI NQFTSFERAC GPLDTITAHP KPHVVATMAL  840
VPGLTPTSA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.2951e-148protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360930.10.0zinc finger protein 646-like isoform X2
TrEMBLA0A2K1ILZ00.0A0A2K1ILZ0_PHYPA; Uncharacterized protein
STRINGPP1S162_50V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-21C2H2-like zinc finger protein