PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_2200V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 839aa    MW: 91435 Da    PI: 5.2786
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_2200V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002223245123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C++C++ F +  +L+ H + H
  Pp3c22_2200V3.2.p 223 YRCGICNEDFESAKSLNLHKKFH 245
                        9*******************998 PP
2zf-C2H2157.1e-05294313221
                        EETTTTEEESSHHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                        +C+ Cgk Fs++  L  H+r
  Pp3c22_2200V3.2.p 294 PCTECGKEFSSWKALFGHMR 313
                        5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.93223245IPR007087Zinc finger, C2H2
PfamPF139120.014223247IPR007087Zinc finger, C2H2
SuperFamilySSF576676.2E-9223245No hitNo description
SMARTSM003550.021223245IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280225245IPR007087Zinc finger, C2H2
SuperFamilySSF576676.2E-9288315No hitNo description
SMARTSM003550.0052293315IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18293320IPR007087Zinc finger, C2H2
PROSITE patternPS000280295315IPR007087Zinc finger, C2H2
PfamPF139124.9E-8295317IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-4295315IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-6552574No hitNo description
PfamPF139123.5E-8552576IPR007087Zinc finger, C2H2
SMARTSM003550.61552574IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93552579IPR007087Zinc finger, C2H2
PROSITE patternPS000280554574IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-6646673No hitNo description
PfamPF139125.2E-13650675IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494651678IPR007087Zinc finger, C2H2
SMARTSM003550.43651673IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280653673IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MEEKALEKAD RELDCVEMST DQVSRGTDQE RGMDLEQEER RGAISVSDNA RNSDPSAACK  60
TKEEEDFGVS VGDKERAERE NIDVVKAELG ELIERESGTE DYGHQAEVSS SRGNVSVTNQ  120
DSESLIHEGS LDRPLSRPRR SHGLRKLNTA KTRSSSLSSQ RSGKCSPSQD LLSGATPDSK  180
GTRKRGEDAE EVRQFSSSEE LNGDGDRERD GDGDGDEVDG TGYRCGICNE DFESAKSLNL  240
HKKFHPQYTL RRNPKRSRKL MDQEFTVDVG AAVPVQASAP TKKTSSMSEE FPKPCTECGK  300
EFSSWKALFG HMRCHPEREW RGIQPPSEKN NPGGQGSGPH AAGGVGNHTN FRRKKPSPVA  360
QLPPPLAPPP VVTHPDDVNE KSGSFDSRRA FVAGKASDNE SDTESIEAAY MSNGDRHTVM  420
GWQTGKRSKR SRQTHRSLDA VNSAKKELSN CRDSAANMAE SNDMIEALML LQAANRSRER  480
LTVTSTPESH GSKSRSKSIT PESGLEAGTE EILQRERKTK METEAVSLCG DTEDGADEFD  540
AGEQGSCARS KYECATCKRQ FKSHQALGGH RASHKKVKGC FARTNVNDGG ANEQSLESMD  600
ADDEEFLKSE EQFPNDFQET SHNSEEDKSC YLTTARDDEE ALYAARKAKA HECSICHRVF  660
NSGQALGGHK RCHWGGSGSG SLGANEVMSA KPVQAGQQQQ SSSRPLKESV LDLNLPAPEC  720
VEEEEIAQQQ EGEAGAAPMN YMPVPSLNFF NIINNPGRSA YGDAVGQQGQ GQQQQQHAAF  780
LQGEESSSNN QVENRMEGIN QFTSFERACG PLDTITAHPK PHVVATMALV PGLTPTSA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.2951e-148protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360930.10.0zinc finger protein 646-like isoform X2
TrEMBLA0A2K1ILZ00.0A0A2K1ILZ0_PHYPA; Uncharacterized protein
STRINGPP1S162_50V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-21C2H2-like zinc finger protein