PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_2550V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 326aa    MW: 37576.6 Da    PI: 4.5814
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_2550V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.78.9e-18117204196
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k + +s++++s +l +p +f++e +  +  + + +lede+g++We  +    ++++  +t+GW++F  +n+L++gD ++F+l++  +f  
  Pp3c22_2550V3.2.p 117 FVKPMQHSNTSNSFWLGIPADFCKERM--PLADEKFILEDENGKEWECLY--LAHKEG--ITGGWRKFLLDNELEDGDCCIFELKSPLRF-- 200
                        899********************9995..334558***************..777777..9**********************9765555.. PP

                        EEEE CS
                 B3  93 vvkv 96 
                        +v+v
  Pp3c22_2550V3.2.p 201 KVHV 204
                        6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-25112207IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-21113206IPR015300DNA-binding pseudobarrel domain
CDDcd100177.59E-24115206No hitNo description
PfamPF023622.1E-15117204IPR003340B3 DNA binding domain
PROSITE profilePS5086313.902117208IPR003340B3 DNA binding domain
SMARTSM010192.1E-17117208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAAMSYEEAR KQRMDENKRR MEELGLVDLS KNLKQLKPKI PAKKPEKRKI DSQEARRSSR  60
VASKPVVSYK EQLDRVRGIR ETRVKKSSSR RKLTESARMA TIEAANEVIK GIEYPAFVKP  120
MQHSNTSNSF WLGIPADFCK ERMPLADEKF ILEDENGKEW ECLYLAHKEG ITGGWRKFLL  180
DNELEDGDCC IFELKSPLRF KVHVLKWDEE DNDLEELVGK KSSKAVTKKK SGKRKARRFE  240
IEDGEEDEDE EDEEDDDDDE EFDSDICDDD SDSHEDDEDS EDDYSPRLTE KEVDTLVAAP  300
SRVSRVPKRK TAEEDDDDSE GHTTT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.103505e-49protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360739.10.0B3 domain-containing protein Os03g0184500-like
TrEMBLA0A2K1IM070.0A0A2K1IM07_PHYPA; Uncharacterized protein
STRINGPP1S162_7V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-37B3 family protein