PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_3910V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 255aa    MW: 28254.3 Da    PI: 4.2547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_3910V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.25.8e-0863105855
                        HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         Er+ R+r+   +e+Lr ++P+++       +Ka+iL  A +YI +Lq
  Pp3c22_3910V3.2.p  63 LERKLRSRMHGQLEQLRAVIPNSF-----TEEKASILADAYKYIEKLQ 105
                        7*********************74.....5789**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.02955104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-661110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-1061116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-762109No hitNo description
Gene3DG3DSA:4.10.280.104.4E-963112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-563105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd021160.007173203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAVSMGLTVD FSDSVGYVNY ADHDLTDIEN DEDYAYTPTA FQPVLPRSCK RTYGVFLGSE  60
VVLERKLRSR MHGQLEQLRA VIPNSFTEEK ASILADAYKY IEKLQRQVEE LYYELGTESC  120
FEEGSSCCED DFSLSHRERT LETNADSESS SGSEFGYSQP TVKVRRTKEG LNIHIECDKR  180
PGLLVDIMEL LESRGLNMEQ ASIVCVEQLV FDGIGSEDEG SDAGVNRQAM HVSAEELGAS  240
LRSLISGPTQ SSTQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360345.10.0transcription factor SCREAM2-like
TrEMBLA0A2K1IM610.0A0A2K1IM61_PHYPA; Uncharacterized protein
STRINGPP1S275_87V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.19e-17bHLH family protein