PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c22_5950V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LBD

Protein Properties

Length: 253aa MW: 26559 Da PI: 8.8019

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c22_5950V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.8	5.2e-45	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasn++kll++lp+++reda++sl+ye++ar++dPvyG+vg i+ lq+q++ql++ Pp3c22_5950V3.2.p 12 PCAACKFLRRKCTEECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPTHRREDAVNSLAYESDARVKDPVYGCVGAISVLQRQVAQLQT 103 7***************************************************************************************** PP DUF260 93 elallkee 100 el+ +++ Pp3c22_5950V3.2.p 104 ELSIAHSD 111 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.644	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.1E-44	12	109	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MKRGMASSSS FPCAACKFLR RKCTEECVFA PYFPPDQPHK FANVHKIFGA SNITKLLNEL 60 PTHRREDAVN SLAYESDARV KDPVYGCVGA ISVLQRQVAQ LQTELSIAHS DLARYTGGAS 120 SSLGIGTGLL PGQVYREHML TREQLMDLAR GDPSHLSREH LMELARAGVN SYEALQALGL 180 SGALGPLGPF PSSSRLVGES ANRSGGGGGG GSGASGSTIG GQIPSPQWTR GGKSYVLACA 240 MSSTLNNSAS IF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-59	12	128	11	131	LOB family transfactor Ramosa2.1
5ly0_B	1e-59	12	128	11	131	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.13487	0.0	protonema

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269\|PubMed:12068116}.

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024360127.1	0.0	protein LATERAL ORGAN BOUNDARIES-like isoform X1
Swissprot	Q9FML4	2e-59	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2K1IMF3	0.0	A0A2K1IMF3_PHYPA; Uncharacterized protein
STRING	PP1S12_355V6.1	1e-169	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-61	LBD family protein

Link Out ? help Back to Top
Phytozome	Pp3c22_5950V3.2.p

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]