PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c23_11030V3.1.p

Common Name

PHYPADRAFT_234503

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 326aa MW: 35830.1 Da PI: 6.7815

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c23_11030V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.8	2.1e-27	75	127	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prl+Wt eLH +F++a+e LGG++kAtPk+il++m++ gL ++h+kSHLQ++R Pp3c23_11030V3.1.p 75 PRLKWTDELHYCFMRAIEILGGPQKATPKAILQVMNIRGLKIAHIKSHLQMFR 127 8***************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-24	72	128	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.88E-13	73	128	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-21	75	128	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MQGEEATDER GGCWPGGSGS PVRGTSSEDG IRGCSTVIDS PVKSGTTCMS APSTLQGGKT 60 SSDGKTRRYV RTSAPRLKWT DELHYCFMRA IEILGGPQKA TPKAILQVMN IRGLKIAHIK 120 SHLQMFRNPK SGKRHGSQSD FQKPNSQMQV SSQQVDTEAE ASWRSVERGA TIFETSTVRE 180 HYADRSATAE SAFAQFNQMG RCSTIAGSLS PTKRESLSIR PESISKDFSY PNYFNQLETL 240 DYDSAERLAH NLLMAMRERR LVESGAGWID SLKPQQCDGQ NEATVSEVPV ELTMSLGQPT 300 AESDPDMRTE LLTLDLTEQL NRPQL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-14	76	130	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-14	76	130	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-14	76	130	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-14	76	130	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024361773.1	0.0	uncharacterized protein LOC112275552
Refseq	XP_024361774.1	0.0	uncharacterized protein LOC112275552
Refseq	XP_024361775.1	0.0	uncharacterized protein LOC112275552
Refseq	XP_024361776.1	0.0	uncharacterized protein LOC112275552
Refseq	XP_024361778.1	0.0	uncharacterized protein LOC112275552
Refseq	XP_024361779.1	0.0	uncharacterized protein LOC112275552
Refseq	XP_024361780.1	0.0	uncharacterized protein LOC112275552
Refseq	XP_024361781.1	0.0	uncharacterized protein LOC112275552
Refseq	XP_024361782.1	0.0	uncharacterized protein LOC112275552
TrEMBL	A0A2K1IIW5	0.0	A0A2K1IIW5_PHYPA; Uncharacterized protein
STRING	PP1S137_199V6.1	1e-178	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-25	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c23_11030V3.1.p
Entrez Gene	5934637

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]