PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c23_11030V3.2.p

Common Name

PHYPADRAFT_234503

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 218aa MW: 24413.2 Da PI: 5.6754

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c23_11030V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	22.4	2.6e-07	1	19	36	54
G2-like 36 mkvkgLtlehvkSHLQkYR 54 m++ gL ++h+kSHLQ++R Pp3c23_11030V3.2.p 1 MNIRGLKIAHIKSHLQMFR 19 9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-5	1	20	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MNIRGLKIAH IKSHLQMFRN PKSGKRHGSQ SDFQKPNSQM QVSSQQVDTE AEASWRSVER 60 GATIFETSTV REHYADRSAT AESAFAQFNQ MGRCSTIAGS LSPTKRESLS IRPESISKDF 120 SYPNYFNQLE TLDYDSAERL AHNLLMAMRE RRLVESGAGW IDSLKPQQCD GQNEATVSEV 180 PVELTMSLGQ PTAESDPDMR TELLTLDLTE QLNRPQL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024361773.1	1e-160	uncharacterized protein LOC112275552
Refseq	XP_024361774.1	1e-160	uncharacterized protein LOC112275552
Refseq	XP_024361775.1	1e-160	uncharacterized protein LOC112275552
Refseq	XP_024361776.1	1e-160	uncharacterized protein LOC112275552
Refseq	XP_024361778.1	1e-160	uncharacterized protein LOC112275552
Refseq	XP_024361779.1	1e-160	uncharacterized protein LOC112275552
Refseq	XP_024361780.1	1e-160	uncharacterized protein LOC112275552
Refseq	XP_024361781.1	1e-160	uncharacterized protein LOC112275552
Refseq	XP_024361782.1	1e-160	uncharacterized protein LOC112275552
TrEMBL	A0A2K1IIW5	1e-159	A0A2K1IIW5_PHYPA; Uncharacterized protein
STRING	PP1S137_199V6.1	3e-91	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c23_11030V3.2.p
Entrez Gene	5934637

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]