PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_18290V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 1067aa    MW: 120453 Da    PI: 5.4895
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_18290V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-09234278345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 
                         +WT+eE+e  +++v+++G g+Wk I +     ++R++ q+k++++
  Pp3c23_18290V3.2.p 234 NWTAEEEEAVKRGVNKFGHGSWKEIKENDSalTNRSAMQLKEKYR 278
                         8*************************9999999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-7231283IPR001005SANT/Myb domain
SuperFamilySSF466892.69E-11233282IPR009057Homeodomain-like
PfamPF002496.6E-7234278IPR001005SANT/Myb domain
PROSITE profilePS500907.317234281IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-10234278IPR009057Homeodomain-like
CDDcd116603.63E-15235281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1067 aa     Download sequence    Send to blast
MTFLAEGDTE VDPQLGYPHA YPKLCRHAYS TGLPMPFTQG PPQRFVPFSP QPEDFQLLKD  60
WDSVFPVVAE SERDSSNAQK FAEELWRQLD HLGNAGFDPE KFRVDPYGNV VHWNADPSSP  120
LAWDIDHWFP QSRGGKTELP NLRIVQWQAY ARKRNRLEFL VPWWDLQHGC SINQFLSAFA  180
AKNADFRKRS FALFFSGGED ELVAREHVGE CRPWPQQFRE KKALCGLAAA GSPNWTAEEE  240
EAVKRGVNKF GHGSWKEIKE NDSALTNRSA MQLKEKYRFM RAVSRNLVRE NSESGQTDIS  300
GRQSAATTAL QKELRVKIMK EEEKREREDE LAQLEGTVVK LKLESEKERI KAQELEALLK  360
KHKHRLEKQR KLAESQTSYR LCLERVLRDT MHQTLSYKEQ ARLTREACNV LIARIDSEKA  420
SCEAMEGKLL QQHSRREQLE ATAVQGNVNG CTTTDQKKQV TRGRDIVDVT SCIFLRAADE  480
EDDEEEEKLI MNANQLSESD TNDEGDEIYN FRRDHQQAAA RKSLVTHAIK VLMQVEDTKE  540
AVEVLPRNSP PKLEAEPSCP KYFRESRKGA VEMREMLKPH QWYKADNETL ESESDCDFAD  600
DEMSPAIRLS TDAAWKDDEN LLRELSQFHG GPISELRDYC AQNSNLRVND LNMADRDAFE  660
RGRPPLSEPA IDIPVPSTRE SRSDSKREVP KDVIMVQTER SKANADTAAS CEQKYVDKLY  720
KPTRFRTPTS ELTGEAIAGD PPSESKGHLD ELLEQILDTH MDNVRQNDAK QHQSNDIDEE  780
KLKEIGKSNL DKWLQVLLFK DAESPCSSPG RGTPLQATSP ALSSMSVAVM RESLERARQQ  840
ELMSRDDENV EGPKSLWGAL LRKMSAKQQL EYESAVFEPK EDYDIVDEAR SSDAVKPLPK  900
ISPTTDLATK QKPVSGALTE GRGSGCDSDC ALPGRSGGNQ LDSIVSNLRP KDANIGSANE  960
PNPLANDSSV SRKTDRRVED GVLETQPSSF EKRHSPRPLS DVEETSETES TDNLNQRSKV  1020
PTPEIKHPHG SKIRSIKVAA FVGWKKSSKS KPMIKSSHVD EVAQLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024363029.10.0uncharacterized protein LOC112276173 isoform X2
TrEMBLA0A2K1IJV90.0A0A2K1IJV9_PHYPA; Uncharacterized protein
STRINGPP1S49_258V6.10.0(Physcomitrella patens)