PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_18290V3.6.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 1109aa    MW: 124518 Da    PI: 5.4412
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_18290V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-09276320345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 
                         +WT+eE+e  +++v+++G g+Wk I +     ++R++ q+k++++
  Pp3c23_18290V3.6.p 276 NWTAEEEEAVKRGVNKFGHGSWKEIKENDSalTNRSAMQLKEKYR 320
                         8*************************9999999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-7273325IPR001005SANT/Myb domain
SuperFamilySSF466892.92E-11275324IPR009057Homeodomain-like
PROSITE profilePS500907.317276323IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-10276320IPR009057Homeodomain-like
PfamPF002496.9E-7276320IPR001005SANT/Myb domain
CDDcd116602.63E-15277323No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1109 aa     Download sequence    Send to blast
MTFLAEGDTE VDPQLGYPHA YPKLCRHAYS TGLPMPFTQG PPQRFVPFSP QPEDFQLLKD  60
WDSVFPVVAE SERDSSNAQK FAEELWRQLD HLGNAGFDPE KFRVDPYGNV VHWNADPSSP  120
LAWDIDHWFP QSRGGKTELP NLRIVQWQAY ARKRNRLEFL VPWWDLQHGC SINQFLSAFA  180
AKNADFRKRS FALFFSGGED ELVAREHVGE CRPWPQQFRE KKALCGLAAA GIVTVSKTDS  240
GGEGRASVGS ATAPTSVEVS QILGSYPYGA ILGSPNWTAE EEEAVKRGVN KFGHGSWKEI  300
KENDSALTNR SAMQLKEKYR FMRAVSRNLV RENSESGQTD ISGRQSAATT ALQKELRVKI  360
MKEEEKRERE DELAQLEGTV VKLKLESEKE RIKAQELEAL LKKHKHRLEK QRKLAESQTS  420
YRLCLERVLR DTMHQTLSYK EQARLTREAC NVLIARIDSE KASCEAMEGK LLQQHSRREQ  480
LEATAVQGNV NGCTTTDQKK QVTRGRDIVD VTSCIFLRAA DEEDDEEEEK LIMNANQLSE  540
SDTNDEGDEI YNFRRDHQQA AARKSLVTHA IKVLMQVEDT KEAVEVLPRN SPPKLEAEPS  600
CPKYFRESRK GAVEMREMLK PHQWYKADNE TLESESDCDF ADDEMSPAIR LSTDAAWKDD  660
ENLLRELSQF HGGPISELRD YCAQNSNLRV NDLNMADRDA FERGRPPLSE PAIDIPVPST  720
RESRSDSKRE VPKDVIMVQT ERSKANADTA ASCEQKYVDK LYKPTRFRTP TSELTGEAIA  780
GDPPSESKGH LDELLEQILD THMDNVRQND AKQHQSNDID EEKLKEIGKS NLDKWLQVLL  840
FKDAESPCSS PGRGTPLQAT SPALSSMSVA VMRESLERAR QQELMSRDDE NVEGPKSLWG  900
ALLRKMSAKQ QLEYESAVFE PKEDYDIVDE ARSSDAVKPL PKISPTTDLA TKQKPVSGAL  960
TEGRGSGCDS DCALPGRSGG NQLDSIVSNL RPKDANIGSA NEPNPLANDS SVSRKTDRRV  1020
EDGVLETQPS SFEKRHSPRP LSDVEETSET ESTDNLNQRS KVPTPEIKHP HGSKIRSIKV  1080
AAFVGWKKSS KSKPMIKSSH VDEVAQLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024363029.10.0uncharacterized protein LOC112276173 isoform X2
TrEMBLA0A2K1IJV90.0A0A2K1IJV9_PHYPA; Uncharacterized protein
STRINGPP1S152_10V6.10.0(Physcomitrella patens)