PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c23_19680V3.1.p

Common Name

N2, PHYPADRAFT_162929

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 481aa MW: 53744.8 Da PI: 7.086

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c23_19680V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.6	7.8e-30	327	380	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt LH++Fv+ave LGG+e+AtPk++lelm k+Ltl+hvkSHLQ+YR+ Pp3c23_19680V3.1.p 327 PRMRWTVALHDQFVQAVELLGGHERATPKSVLELMRRKDLTLAHVKSHLQMYRT 380 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-14	324	380	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-26	325	380	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-22	327	380	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	328	379	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MQESSLDKSM TLLSSTTNQP GPDLALHICP PNSSSEVRPK ASSPQCVSQD LPEHVHGFDL 60 WKQPPKSTTS CTDSESNVSS PVNEQSSYAA NGIDNLGAST VLCLANPQPS DPPYSKQAPE 120 GMAFGGRDEV QENLLESRYL RNELAHPFLL DMDSRSDVKL ISPESDRTSS PSERVRQDFR 180 RMYTGEIQED FSRRLAENNS DNFHFQPRVF PPAPPYSAIH ALSLGRLSEP DAQTDALFRT 240 DLLKLGNYHM GEREPWVSHS NNYGFEDDVS RQVGKGLYTS TFPGKFPTFF RSCGASYNVR 300 QEDMYANFAF RPRFPPKSPC KRSIRAPRMR WTVALHDQFV QAVELLGGHE RATPKSVLEL 360 MRRKDLTLAH VKSHLQMYRT VKTTDKSGSS PGPGDLELSP TSEARPPTES LLVSDGISRS 420 RKSIHSSNSG VHNLELGNYH NLDDRQDTTV PKHNKVWLPE FPSNYNPTQR GCWKFGTLSC 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MQESSLDKSM TLLSSTTNQP GPDLALHICP PNSSSEVRPK ASSPQCVSQD LPEHVHGFDL  60
WKQPPKSTTS CTDSESNVSS PVNEQSSYAA NGIDNLGAST VLCLANPQPS DPPYSKQAPE  120
GMAFGGRDEV QENLLESRYL RNELAHPFLL DMDSRSDVKL ISPESDRTSS PSERVRQDFR  180
RMYTGEIQED FSRRLAENNS DNFHFQPRVF PPAPPYSAIH ALSLGRLSEP DAQTDALFRT  240
DLLKLGNYHM GEREPWVSHS NNYGFEDDVS RQVGKGLYTS TFPGKFPTFF RSCGASYNVR  300
QEDMYANFAF RPRFPPKSPC KRSIRAPRMR WTVALHDQFV QAVELLGGHE RATPKSVLEL  360
MRRKDLTLAH VKSHLQMYRT VKTTDKSGSS PGPGDLELSP TSEARPPTES LLVSDGISRS  420
RKSIHSSNSG VHNLELGNYH NLDDRQDTTV PKHNKVWLPE FPSNYNPTQR GCWKFGTLSC  480
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-17	328	382	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-17	328	382	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-17	328	382	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-17	328	382	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-17	328	382	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-17	328	382	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-17	328	382	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-17	328	382	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-17	328	382	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-17	328	382	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-17	328	382	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-17	328	382	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.5003	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024362563.1	0.0	uncharacterized protein LOC112275961 isoform X1
TrEMBL	A9S5B8	0.0	A9S5B8_PHYPA; KANADI 2
STRING	PP1S49_140V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP570	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	4e-38	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c23_19680V3.1.p
Entrez Gene	5924724

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]