PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_3520V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 341aa    MW: 38904.5 Da    PI: 8.1305
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_3520V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like37.45.5e-122253255
            G2-like 32 ilelmkvkgLtlehvkSHLQkYRl 55
                       +l+lm+vkgLt++hvkSHLQ+YR+
  Pp3c23_3520V3.3.p  2 VLQLMDVKGLTIAHVKSHLQMYRS 25
                       89*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-11227IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVLQLMDVKG LTIAHVKSHL QMYRSMKNDE SVQSDIGYWR EGHLHPTNLW LQATPERSRI  60
SDVLIHEQTA EIPMRSSSVK KQLETEWEMR RREYDARITF TMLMEGRVEY PAIITPTTRV  120
ESRSSTQLLK LLDGSGDSGP GRRRPSDVWT PFSELDFKNQ QDDAHRNPFP SFASRRLDIT  180
SRYTNDPLKF QGCEIHKQQS DLTRPQTQRP TVQDSFDRYS YDHNSECNWR QNRYSTDPNS  240
SLSLSRPHSW PGCTVPSQKG IILSHRSTAM ATKPVPIVDF LSSPQSRNIG RKGAPGDGLR  300
LHLTMSTGSG SEGHDEGPES LYRKKEEDVD LTLDLTMSTR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361958.10.0uncharacterized protein LOC112275647
RefseqXP_024361959.10.0uncharacterized protein LOC112275647
TrEMBLA0A2K1II050.0A0A2K1II05_PHYPA; Uncharacterized protein
STRINGPP1S82_168V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.13e-11G2-like family protein