PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_7400V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ARR-B
Protein Properties Length: 710aa    MW: 76082.8 Da    PI: 6.4292
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_7400V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.31.7e-28267320155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv+av+qL G+++A+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Pp3c23_7400V3.1.p 267 KPRVVWSVELHQQFVSAVNQL-GIDRAVPKRILELMGVHGLTRENVASHLQKYRL 320
                        79*******************.********************************8 PP
2Response_reg76.31.1e-25741821109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdDep+ +++l+++l++  y +v+++  +++al ll+e    +Dl++ D++mp+mdG++ll+     e++lp+i+++++ge + + + +
  Pp3c23_7400V3.1.p  74 VLVVDDEPVTLMVLEKMLTNCSY-RVTTCGRATDALCLLREDIdkFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMMSGNGETSAVMKGI 163
                        89*********************.***************887667*******************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+ ++el++
  Pp3c23_7400V3.1.p 164 THGACDYLLKPVRQKELRN 182
                        ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521729.11E-3671196IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.8E-4171205No hitNo description
SMARTSM004488.3E-3272184IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.58573188IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.0E-2374183IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.23E-2875187No hitNo description
SuperFamilySSF466891.54E-19264324IPR009057Homeodomain-like
PROSITE profilePS5129413.558264323IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.7E-30265325IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-24267320IPR006447Myb domain, plants
PfamPF002496.2E-8269319IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MGGGHLSSRS GDDMAEGNLG PTMTSLQQQP LPLIPNPHNS RPCYSATNSS SSNARGANLA  60
KLDTPDAFPA GLRVLVVDDE PVTLMVLEKM LTNCSYRVTT CGRATDALCL LREDIDKFDL  120
VISDVNMPDM DGFKLLELVG LEMDLPVIMM SGNGETSAVM KGITHGACDY LLKPVRQKEL  180
RNIWQHVVRK RRQDVKIARE TKSVEEGGVC VREKRTGPDD VDYTSSATGD TGDGNWRKKR  240
KGENQTFKDE TEEDVEQEND DPSTMKKPRV VWSVELHQQF VSAVNQLGID RAVPKRILEL  300
MGVHGLTREN VASHLQKYRL YLKRISGVSN QQSNMSAHFG GPEPFSMLSP DMSVSIANGQ  360
LNPQALAQFH MLGRMNSSNG VGFSGGLDPM LSHQIFLQDL PRPPHLNNML KRNTGMLSPL  420
PNAMPHLEPQ LAECHHSSHH LPVMNELEDF STNSKVFPQM NGNLDVSIAS LGVGNGGLGS  480
NPSNDTLLMH MLQSRTAQQG SALSPTLPQP RGGLTPTHLL SNDVGFASVG SLPNLAPAVG  540
LSAITGSGGA RDLSPSAVGT GGSLSSPLGP LVRRPLMVEE PSNLVNFSMA PSVQSPKPGG  600
GAGVNESLDQ QPTMWGLYNP LTQLNPGHSR GLSQDNFPWS GLAVNLGLGD SQSLSVGMSS  660
GLGAQFSPQG QDHGIGFASP GQGSYNRQNV SFPVSSALDG RMVRSSYEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22263326164ARR10-B
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.180330.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362455.10.0two-component response regulator ARR2-like
TrEMBLA0A2K1IIC50.0A0A2K1IIC5_PHYPA; Uncharacterized protein
STRINGPP1S10_278V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-108response regulator 2