PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_800V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 595aa    MW: 63149.5 Da    PI: 6.715
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_800V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005578100123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C  C+++F  +  L  H+++H
  Pp3c23_800V3.1.p  78 YECRFCNMRFAKSQALGGHMNRH 100
                       99********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.04E-575104No hitNo description
PROSITE profilePS5015710.74178105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0010094Biological Processspecification of carpel identity
GO:0010097Biological Processspecification of stamen identity
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MRMGGVAGDS SILVALPSKP NPRRPPPLSF PLSSAAGGEA DWEDALASPE QSRPKMKQKS  60
TDDGCTTDEE GDLSKTLYEC RFCNMRFAKS QALGGHMNRH RLEREKEQYQ HAQQLVSSLA  120
QQQMPRTWNT MAAELNPSGT GAALARLSNQ MTGAPRVDGS RPQLPPQISF NSTRQPISTT  180
CSNSIPTSPS SNYYLPSNSS SKNLQHLQWK VDGFDSNGTI PRSGSQEGLN ALDSTLQGDG  240
MRDDFLSGML RPRQDGGSFV SSQFNNMNPM LSRGLGGPGS NSFHGSGPDM IQGGSGTTGL  300
QFCHSRTNSH QPQSRMNDVL RQLASTSTPL NSTLMQGSLP NDVKPPGASF AAMRTSASAP  360
AYFMQGNNNV PQFNQQQMGR PSESLLQPFQ TSINRPLGNA STSQHHAMSR SSLFPSYSFN  420
NLGAPNFGSL APSHDPNALQ GFENNFAGVG QNGSMSRPPL TQTSSGSSAS GSFGICGGHE  480
GMYGVKMQSD DAYNQLSVNQ DMGASHISHG ALMGSTVAAP MVASVVHEVV DGNHCESMNT  540
TTVESGDVSG LSAPARYQST DFSSGSPEWK HLNSPSGQLE ANISSPTSDD YCSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362088.10.0uncharacterized protein LOC112275716 isoform X2
TrEMBLA0A2K1IHP60.0A0A2K1IHP6_PHYPA; Uncharacterized protein
STRINGPP1S210_60V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.14e-08C2H2 family protein