PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_960V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 425aa    MW: 46889.2 Da    PI: 6.7323
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_960V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000334264123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C  C++ F+ +  L  H+++H
  Pp3c23_960V3.2.p 42 FECRFCDMKFPKSQALGGHMNRH 64
                      89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.2014269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEVINSRFEP PALNSAGRVA RDGDEGNPNK RRKPEEDSDN KFECRFCDMK FPKSQALGGH  60
MNRHRVEREH EEIQKARNLL IAQQHHSPPY YAAAQYYSRM DGASTSVDPT RNFSSTAGSF  120
MTPQMPYYQP QAQSSVQNWP GNQLLPLQPN LDSAHTNLQG TNYLNPTDNT RPYQSLPMLQ  180
REIPMHGLQH PQHAPQQAPR NSVPLNYSDA RTLLHSSDPG GGMLQYHFES GQQLQHRFLQ  240
NHSGGSTLQD VVSPPSANSN QQQQLGQRTH SRTTFMQHAR ERLEVQVDQS GNLPQSTHNP  300
SQQQQRHGHE ANYATNPSAV AAAAVGELPS LQIQLDSAHF QVPRPFSHHS SFDHKPDVVG  360
SMLSGLGNGE PVGVGVGNSS SSSSSVFHLA GLDDHDPHEF RASAAMDPSD RDALHTHLEG  420
SAET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362192.10.0uncharacterized protein LOC112275785 isoform X1
TrEMBLA0A2K1IHQ60.0A0A2K1IHQ6_PHYPA; Uncharacterized protein
STRINGPP1S210_74V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.11e-08C2H2 family protein