PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_960V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 463aa    MW: 50886.6 Da    PI: 6.6662
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_960V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003680102123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  C++ F+ +  L  H+++H
  Pp3c23_960V3.3.p  80 FECRFCDMKFPKSQALGGHMNRH 102
                       89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.20180107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MMLTNNNRDS QDTTPSTSSI PPAQNQAAVD LSSGRPLVME VINSRFEPPA LNSAGRVARD  60
GDEGNPNKRR KPEEDSDNKF ECRFCDMKFP KSQALGGHMN RHRVEREHEE IQKARNLLIA  120
QQHHSPPYYA AAQYYSRMDG ASTSVDPTRN FSSTAGSFMT PQMPYYQPQA QSSVQNWPGN  180
QLLPLQPNLD SAHTNLQGTN YLNPTDNTRP YQSLPMLQRE IPMHGLQHPQ HAPQQAPRNS  240
VPLNYSDART LLHSSDPGGG MLQYHFESGQ QLQHRFLQNH SGGSTLQDVV SPPSANSNQQ  300
QQLGQRTHSR TTFMQHARER LEVQVDQSGN LPQSTHNPSQ QQQRHGHEAN YATNPSAVAA  360
AAVGELPSLQ IQLDSAHFQV PRPFSHHSSF DHKPDVVGSM LSGLGNGEPV GVGVGNSSSS  420
SSSVFHLAGL DDHDPHEFRA SAAMDPSDRD ALHTHLEGSA ET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362192.10.0uncharacterized protein LOC112275785 isoform X1
TrEMBLA0A2K1IHQ60.0A0A2K1IHQ6_PHYPA; Uncharacterized protein
STRINGPP1S210_74V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP395527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.11e-08C2H2 family protein