PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c24_11770V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 362aa MW: 39885.4 Da PI: 6.0803

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c24_11770V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.1	5.5e-10	3	29	17	45
HHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwq 45 ++lG++ W++Ia++++ gRt++++k++w Pp3c24_11770V3.2.p 3 AKLGNK-WAKIASCLP-GRTDNDVKNFWS 29 69**.*****.*********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.74	1	36	IPR017930	Myb domain
CDD	cd00167	1.86E-6	1	28	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-11	3	31	IPR009057	Homeodomain-like
Pfam	PF00249	9.5E-8	3	29	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.22E-7	3	36	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MQAKLGNKWA KIASCLPGRT DNDVKNFWST RQKRILRALQ RPKMASGSTD ASADTSDLSK 60 EPSLTDFGGF QVHSPSGAAS VIGSGMGHQF IFAEGDSEFR DSAMDTSRCH MRHHLHAYNA 120 MEADDVLSSH HKLSEPLPAG ELGFHATEKD LTTSMAKELT DSKSQTYLHQ QLSVALPCVT 180 IASRTTRSIK RRPRSRRDAR STILSCFEQP IVETTDLSNP LAISELGTPP NISDNFPISR 240 PSHTIPTPIS LNSQLSLTES TLQPNNPSNT TNNYLEFLLQ SDGSLTQNVQ IFSTEFPLFL 300 TNSHQWEKLP MLYSENSNLY GGCNTKDTDS CSPDSVITNF TDVFDSLEPL NSTPSEWWVA 360 Q*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MQAKLGNKWA KIASCLPGRT DNDVKNFWST RQKRILRALQ RPKMASGSTD ASADTSDLSK  60
EPSLTDFGGF QVHSPSGAAS VIGSGMGHQF IFAEGDSEFR DSAMDTSRCH MRHHLHAYNA  120
MEADDVLSSH HKLSEPLPAG ELGFHATEKD LTTSMAKELT DSKSQTYLHQ QLSVALPCVT  180
IASRTTRSIK RRPRSRRDAR STILSCFEQP IVETTDLSNP LAISELGTPP NISDNFPISR  240
PSHTIPTPIS LNSQLSLTES TLQPNNPSNT TNNYLEFLLQ SDGSLTQNVQ IFSTEFPLFL  300
TNSHQWEKLP MLYSENSNLY GGCNTKDTDS CSPDSVITNF TDVFDSLEPL NSTPSEWWVA  360
Q*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	197	RRPRSRRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024363644.1	0.0	uncharacterized protein LOC112276493
TrEMBL	A0A2K1IGF3	1e-159	A0A2K1IGF3_PHYPA; Uncharacterized protein
STRING	PP1S114_136V6.1	1e-154	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	2e-14	MYB family protein

Link Out ? help Back to Top
Phytozome	Pp3c24_11770V3.2.p