PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c24_13130V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family E2F/DP
Protein Properties Length: 342aa    MW: 38144.1 Da    PI: 8.9272
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c24_13130V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP27.74.4e-09551061664
             E2F_TDP  16 llekseegivtlnevakeLvse...dvknkrRRiYDilNVLealnliekkek 64 
                          l  ++ g ++l +va+e+ s+   +  +  RRiYD++NV e+ ++i ++ +
  Pp3c24_13130V3.2.p  55 KLMAAQGGPCNLLQVATEIHSQaedKHNTTLRRIYDVVNVCEGAGVIVRTGQ 106
                         4444666999*********887998666799****************99544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.4E-540118IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-843105IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.3E-643106IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.7E-744105IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MATNDDTIAE ELNVREKASA HEPRIPLAVV VSPGSICGRI RANPLKHLAS LLHEKLMAAQ  60
GGPCNLLQVA TEIHSQAEDK HNTTLRRIYD VVNVCEGAGV IVRTGQRSPK SKKASASGHI  120
VPPKCFPSRR TGKRSLRGGA TIQWLSASSY NILGESDSSP PSPCKSRKIL LETERRETFE  180
RILQKKRVCD TLSKQVAILQ KLMEQNQSQC RLNQCASGSM GCTEVEFPAH LRMPRSLERA  240
STNTEVASVR PGMEFSKIIL DRDIYAELNN LDCEYLVNQQ RLCTSKLLHL PFVMLATNPD  300
ANLNIYMMGD PPHEVRLQLD RNYCLMDHIQ MIKMLPRFST M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134RRTGKRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024363724.10.0uncharacterized protein LOC112276549
RefseqXP_024363725.10.0uncharacterized protein LOC112276549
TrEMBLA0A2K1IGM00.0A0A2K1IGM0_PHYPA; Uncharacterized protein
STRINGPP1S410_52V6.10.0(Physcomitrella patens)