PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c24_13550V3.1.p
Common NamePHYPADRAFT_173099
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GATA
Protein Properties Length: 589aa    MW: 64841.8 Da    PI: 6.748
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c24_13550V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.22.6e-14741135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C +Cg  +TplWR+gp  ++ LCnaCG ++r kg+
  Pp3c24_13550V3.1.p  7 CGHCGIATTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                        9***************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-8155IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-10543No hitNo description
CDDcd002021.53E-14655No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003203.2E-12741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-11741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.686740IPR000679Zinc finger, GATA-type
PfamPF139194.6E-8289375IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MGKQGPCGHC GIATTPLWRN GPPEKPVLCN ACGSRWRTKG TLSNYMPMHS GGFGGSAIPE  60
GSALVRGRRN SKKLFSEPRS HKRKEPCEGH RETRAPLRLQ KRSLKAAGND SISTSSLSSN  120
VSGLDDAANI TSSNTHLDVA VSSPFWEGHI PTRRRTSTSR VCTSVDRLSQ QFQQVVCDVP  180
TTSSTMMHDF ADDLLVDSKP STMADEIGLG SVFIRQTTLG VDKTESRSHS VEDPYHTRVQ  240
NNGAPLQQLP NGTERLTSVR GKEKAKEYKK VDSGHLKATN TLLENYPYNK RDVLQSCQSP  300
LAFLELKDIL NFDTFTGLLT EQEQGQLMRF LSSVDVPEAS ESLKEMFTSA EFEGSLNNFQ  360
HLLEEGMFEV SMLGVNSRIL QHFQQLLIQT DLTSSGWMEQ FLQLQNRSRR RGGSVDLNKI  420
KELNKEKVKG SWLSHTKNTP ANNKQSPGRL PSQSGISVQS GGLMNASVSS GIILETLNVA  480
PDLGNSSNDR GYGFEGGGDC FPSISLLSTE QMSANDLPNL QPPGPDETET DLLFNMPTNM  540
MTFQDTALLQ QPVWSKAKEI DTYQVDMGSP LTSNMWHMES TPAELFWT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.176550.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024364460.10.0GATA transcription factor 26-like isoform X1
RefseqXP_024364461.10.0GATA transcription factor 26-like isoform X1
RefseqXP_024364462.10.0GATA transcription factor 26-like isoform X1
TrEMBLA0A2K1IGP20.0A0A2K1IGP2_PHYPA; Uncharacterized protein
STRINGPP1S410_8V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.32e-46GATA transcription factor 26
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]