PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c24_17130V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 850aa MW: 94422.2 Da PI: 7.8806

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c24_17130V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.1	3.1e-11	176	224	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 r+ W++eE++ l+++ +++G+g+Wk I + + ++Rt q+k++++ Pp3c24_17130V3.2.p 176 RQQWSPEEEDGLKRGLQKYGPGSWKEIKEQEPvlLNRTMPQIKEKYRVM 224 899*******************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.979	171	229	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-12	172	224	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.61E-11	175	226	IPR009057	Homeodomain-like
SMART	SM00717	9.5E-7	175	227	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-9	176	223	IPR001005	SANT/Myb domain
CDD	cd11660	4.37E-15	177	225	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031627	Biological Process	telomeric loop formation
GO:0000783	Cellular Component	nuclear telomere cap complex
GO:0003691	Molecular Function	double-stranded telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MLLTLTEEEK TIDPTLGYPA GYAKLCHHAL TQPQGVLTPF TEGPPQRFVP YAPSSEELLL 60 IKEWDAIFPI IPDIDEEAPN AHEFAEEIWE QLDHLGRRSF ALFFADGEDE KVFRYHLGDS 120 RSWSPQHRGK MSSCSMAGGG VSSMGKVKLA TSKVSSSTRS AMSANLGGSL TESSNRQQWS 180 PEEEDGLKRG LQKYGPGSWK EIKEQEPVLL NRTMPQIKEK YRVMRDFGKE NIASTSVVTG 240 RNDHDNHSDV SNTMQKELRL KKMREEGKRE KEKEVARLEE TVRTLKAQNE KERLAILELE 300 GNLSKHKQKV EKQRRWAETQ SSYRLCLERM IRNAMHQSIS YKEQACQNQA ACNALMARLD 360 CQDMTCEASE KILQRHSPRE ALAALGIPGS SGSGQRKPSQ GQEIVDVNSR LFLVSKNDGQ 420 VVAPCRGLQR YTSGLDTEDE IEEGNSPRRN GFSIQSSFLD VAALQHGSPS TSKGKKKLPR 480 EGAKRKAISI GATHAQPTKQ AVHRQHFEKG LEGNGPMRSK LMDEKEGSKL PDSQQEICQV 540 EPHGVQGDSS RVMEELIQEV IIAQHDKIQN VEAAALESVK SNDQRLKKAG KSNIDRWLHV 600 LLDEAFPRIS PDLAAQSSEC QTNGQPPLSP DLSALSMAAI RGSVELEEGR GSPKLLKNGC 660 AEDLKGRLSE IMRKLSVGNT GEESGVDLSR GPNNRLGLRN TSTSFEGFKL SDSSLHEHLQ 720 SESVCDITSS IPESVRNWPE GGIKPRGGAD WYRDSSSNKV KTSYSKSVKD EPTLSHCLIL 780 HKKSVSEDME GIDWERLSSG NSRALVDNKA GLHHRHGLRA TIKACSLKWR RAAKRLDKPL 840 QEGSIPLQE*

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MLLTLTEEEK TIDPTLGYPA GYAKLCHHAL TQPQGVLTPF TEGPPQRFVP YAPSSEELLL  60
IKEWDAIFPI IPDIDEEAPN AHEFAEEIWE QLDHLGRRSF ALFFADGEDE KVFRYHLGDS  120
RSWSPQHRGK MSSCSMAGGG VSSMGKVKLA TSKVSSSTRS AMSANLGGSL TESSNRQQWS  180
PEEEDGLKRG LQKYGPGSWK EIKEQEPVLL NRTMPQIKEK YRVMRDFGKE NIASTSVVTG  240
RNDHDNHSDV SNTMQKELRL KKMREEGKRE KEKEVARLEE TVRTLKAQNE KERLAILELE  300
GNLSKHKQKV EKQRRWAETQ SSYRLCLERM IRNAMHQSIS YKEQACQNQA ACNALMARLD  360
CQDMTCEASE KILQRHSPRE ALAALGIPGS SGSGQRKPSQ GQEIVDVNSR LFLVSKNDGQ  420
VVAPCRGLQR YTSGLDTEDE IEEGNSPRRN GFSIQSSFLD VAALQHGSPS TSKGKKKLPR  480
EGAKRKAISI GATHAQPTKQ AVHRQHFEKG LEGNGPMRSK LMDEKEGSKL PDSQQEICQV  540
EPHGVQGDSS RVMEELIQEV IIAQHDKIQN VEAAALESVK SNDQRLKKAG KSNIDRWLHV  600
LLDEAFPRIS PDLAAQSSEC QTNGQPPLSP DLSALSMAAI RGSVELEEGR GSPKLLKNGC  660
AEDLKGRLSE IMRKLSVGNT GEESGVDLSR GPNNRLGLRN TSTSFEGFKL SDSSLHEHLQ  720
SESVCDITSS IPESVRNWPE GGIKPRGGAD WYRDSSSNKV KTSYSKSVKD EPTLSHCLIL  780
HKKSVSEDME GIDWERLSSG NSRALVDNKA GLHHRHGLRA TIKACSLKWR RAAKRLDKPL  840
QEGSIPLQE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024363547.1	0.0	uncharacterized protein LOC112276449 isoform X1
TrEMBL	A9TLQ1	0.0	A9TLQ1_PHYPA; Predicted protein (Fragment)
STRING	PP1S260_3V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c24_17130V3.2.p