PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c24_20450V3.1.p

Common Name

PHYPADRAFT_82162

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 185aa MW: 21542.2 Da PI: 4.3126

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c24_20450V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.1	2.2e-08	12	103	2	85
trihelix 2 WtkqevlaLiearremeerlr........rgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 W ++e+ a++e e +++ r++ + W+ +s+++ e f r + C++ w+ l + y++i+++e+k +s+ +++c+ + Pp3c24_20450V3.1.p 12 WVDDEIYAMLESMLEPMREFVleskgvaaRASVGFNTWDYISDNLfDEYCFDRASMSCQQQWDTLLQSYRAIQDHESKIQSD-TRSCVSYW 101 8999999999888744444442221122245577899******667777*************************9655.55788777 PP trihelix 84 ql 85 ++ Pp3c24_20450V3.1.p 102 KI 103 65 PP

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MPSWRRVPGR PWVDDEIYAM LESMLEPMRE FVLESKGVAA RASVGFNTWD YISDNLFDEY 60 CFDRASMSCQ QQWDTLLQSY RAIQDHESKI QSDTRSCVSY WKIYAEERSN KKLPLAFDLE 120 WYKLIEKICA AKIVEENCMK KYRFMCSEFD EINTMSEYEF LSGVSTTTME SQTEVAAGSY 180 DSAD*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024363264.1	1e-136	uncharacterized protein LOC112276311 isoform X3
TrEMBL	A0A2K1IHJ3	1e-135	A0A2K1IHJ3_PHYPA; Uncharacterized protein
TrEMBL	A9SPF9	1e-134	A9SPF9_PHYPA; Predicted protein
STRING	PP1S101_58V6.1	1e-134	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c24_20450V3.1.p
Entrez Gene	5931437

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]