PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c24_20810V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 157aa    MW: 17312.3 Da    PI: 7.3068
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c24_20810V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS23.94.5e-0880138318374
                GRAS 318 rleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         +l++aG + v++s +a+ q+ lll++ +  s+ +++ +e g+l lgW+d  Lv +SaW+
  Pp3c24_20810V3.1.p  80 KLSKAGINVVAVSANAVHQVALLLSQgFCcSKDHMLLKEFGALKLGWEDLCLVPTSAWT 138
                         6899******************998634468889************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.5E-580138IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MHLPLYDVSS CHSTTLRLMQ KLLLKIITMV EEDLLHRGLF HNQFIDALQY HFALGANHNN  60
KSLEHLMAEQ QLMSSSIGDK LSKAGINVVA VSANAVHQVA LLLSQGFCCS KDHMLLKEFG  120
ALKLGWEDLC LVPTSAWTST LILNCPSIHM VFANGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-235138224379Protein SCARECROW
5b3h_A7e-235138223378Protein SCARECROW
5b3h_D7e-235138223378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358664.11e-42protein SCARECROW-like isoform X1
RefseqXP_024358666.11e-42protein SCARECROW-like isoform X2
TrEMBLA0A2K1IHM51e-110A0A2K1IHM5_PHYPA; Uncharacterized protein
STRINGPP1S101_16V6.12e-46(Physcomitrella patens)
STRINGPP1S85_139V6.15e-42(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-24GRAS family protein