PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c24_2500V3.2.p

Common Name

PHYPADRAFT_160092

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 420aa MW: 45887.2 Da PI: 8.5315

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c24_2500V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	187	210	3	23
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C +Cg+ Fs ++ L+ H+ + H Pp3c24_2500V3.2.p 187 CVypKCGEAFSKPEALEMHQVVrH 210 66669**************98777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.704	185	215	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	187	210	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.56E-21	212	418	No hit	No description
Gene3D	G3DSA:3.90.228.10	5.1E-16	214	418	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MPGPCFSWAK SISFKAKSIS FKSDSGSDIS HESRFGSFSS TPLRGDHPKS PSRSNGCSQG 60 CTPSIANLKE MLQGNSTLLG SRSVSHPSTC ESLPKDEVVV HKTKNADSLH RAPLKTKPTR 120 SFLKQYSISN VQEATRTSKE LVNTVAKSKD NLCFVKGCSE CSMHCNSGEG GIVIRDTHHH 180 DALSPKCVYP KCGEAFSKPE ALEMHQVVRH AVSELGRGNP SLNVIEIIFK TSWSVEAPCV 240 RIERILKIDN TDRHISEFQS YRDAVKKSAS DEGMQHERCL ADGNELLRFY GSSFVCSLGT 300 NGSTALCSMA SCNVCSIIRW GFAVRNERGI FTTATSGKAH EIITAREKEN WRGKHAMLVC 360 RVIAGRICKT LDKASRFIDA SCLPDGYDSV SPGMATNLDE LTVFNPKAVL PCFLVVYSF*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MPGPCFSWAK SISFKAKSIS FKSDSGSDIS HESRFGSFSS TPLRGDHPKS PSRSNGCSQG  60
CTPSIANLKE MLQGNSTLLG SRSVSHPSTC ESLPKDEVVV HKTKNADSLH RAPLKTKPTR  120
SFLKQYSISN VQEATRTSKE LVNTVAKSKD NLCFVKGCSE CSMHCNSGEG GIVIRDTHHH  180
DALSPKCVYP KCGEAFSKPE ALEMHQVVRH AVSELGRGNP SLNVIEIIFK TSWSVEAPCV  240
RIERILKIDN TDRHISEFQS YRDAVKKSAS DEGMQHERCL ADGNELLRFY GSSFVCSLGT  300
NGSTALCSMA SCNVCSIIRW GFAVRNERGI FTTATSGKAH EIITAREKEN WRGKHAMLVC  360
RVIAGRICKT LDKASRFIDA SCLPDGYDSV SPGMATNLDE LTVFNPKAVL PCFLVVYSF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024364710.1	0.0	uncharacterized protein LOC112277014
TrEMBL	A0A2K1IF90	0.0	A0A2K1IF90_PHYPA; Uncharacterized protein
STRING	PP1S18_217V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-59	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pp3c24_2500V3.2.p
Entrez Gene	5918867

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]