PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c24_6460V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Nin-like
Protein Properties Length: 329aa    MW: 35698.7 Da    PI: 8.5997
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c24_6460V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK78.85.7e-25257303349
             RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 
                         ++++ dl+++F+lpi++AAkeLg+c+TvLK+iCR++G++RWPhRk+
  Pp3c24_6460V3.1.p 257 GKLKMIDLAQHFHLPINAAAKELGICPTVLKKICRRNGMRRWPHRKV 303
                        689999****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.835246328IPR003035RWP-RK domain
PfamPF020426.5E-23259303IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTCPSTICTT GFYMVGDTGG LVDMEDRAFV SVEYGASTSG GAHSMNFSGT PLNWDMVREG  60
SIQPNAGKSQ NQQFQCASCQ ILRRIVHSNG IQDTKLEIHG CDGQSYHAVL QTRFCIDDGF  120
PASFEQQMVE FLVANAEYVK HFLLQYSLLR RKEGFVLQHD SLASHGSGGV GMGMSSERVM  180
GANGRCISKQ IGHIAPPEVL CNSSAYSSSG CTYGKAGLKQ DKFHGSGSID SSDNADASVG  240
LVKPQKSNAA AQRERTGKLK MIDLAQHFHL PINAAAKELG ICPTVLKKIC RRNGMRRWPH  300
RKVGVLFNMK YSSFHIVTCL FCVAALKN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024363596.10.0uncharacterized protein LOC112276464 isoform X1
TrEMBLA0A2K1IFS50.0A0A2K1IFS5_PHYPA; Uncharacterized protein
STRINGPP1S387_8V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.19e-11RWP-RK domain-containing protein