PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c24_6460V3.2.p

Common Name

PHYPADRAFT_99342

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 351aa MW: 37968.1 Da PI: 8.0314

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c24_6460V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.1	1.3e-26	257	306	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++ dl+++F+lpi++AAkeLg+c+TvLK+iCR++G++RWPhRkiks+ Pp3c24_6460V3.2.p 257 GKLKMIDLAQHFHLPINAAAKELGICPTVLKKICRRNGMRRWPHRKIKSI 306 689999******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.963	246	326	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-24	259	306	IPR003035	RWP-RK domain

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MTCPSTICTT GFYMVGDTGG LVDMEDRAFV SVEYGASTSG GAHSMNFSGT PLNWDMVREG 60 SIQPNAGKSQ NQQFQCASCQ ILRRIVHSNG IQDTKLEIHG CDGQSYHAVL QTRFCIDDGF 120 PASFEQQMVE FLVANAEYVK HFLLQYSLLR RKEGFVLQHD SLASHGSGGV GMGMSSERVM 180 GANGRCISKQ IGHIAPPEVL CNSSAYSSSG CTYGKAGLKQ DKFHGSGSID SSDNADASVG 240 LVKPQKSNAA AQRERTGKLK MIDLAQHFHL PINAAAKELG ICPTVLKKIC RRNGMRRWPH 300 RKIKSIERII ATLEQTIAEG SGQGDEGIRL EIAMLRNERA QLCAGFSGDI *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MTCPSTICTT GFYMVGDTGG LVDMEDRAFV SVEYGASTSG GAHSMNFSGT PLNWDMVREG  60
SIQPNAGKSQ NQQFQCASCQ ILRRIVHSNG IQDTKLEIHG CDGQSYHAVL QTRFCIDDGF  120
PASFEQQMVE FLVANAEYVK HFLLQYSLLR RKEGFVLQHD SLASHGSGGV GMGMSSERVM  180
GANGRCISKQ IGHIAPPEVL CNSSAYSSSG CTYGKAGLKQ DKFHGSGSID SSDNADASVG  240
LVKPQKSNAA AQRERTGKLK MIDLAQHFHL PINAAAKELG ICPTVLKKIC RRNGMRRWPH  300
RKIKSIERII ATLEQTIAEG SGQGDEGIRL EIAMLRNERA QLCAGFSGDI *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024363596.1	0.0	uncharacterized protein LOC112276464 isoform X1
TrEMBL	A0A2K1IFS5	0.0	A0A2K1IFS5_PHYPA; Uncharacterized protein
STRING	PP1S387_8V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pp3c24_6460V3.2.p
Entrez Gene	5947230

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]