PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c24_6460V3.3.p

Common Name

PHYPADRAFT_99342

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 554aa MW: 60127 Da PI: 5.1437

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c24_6460V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.3	2.4e-26	460	509	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++ dl+++F+lpi++AAkeLg+c+TvLK+iCR++G++RWPhRkiks+ Pp3c24_6460V3.3.p 460 GKLKMIDLAQHFHLPINAAAKELGICPTVLKKICRRNGMRRWPHRKIKSI 509 689999******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.963	449	529	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-24	462	509	IPR003035	RWP-RK domain

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MASGLLESST CEEVVLDASN SPRFDINEFL KPPKDFNTDE QFFNFSAFNI PAPTGNMLTP 60 LPPLNIRRSG RSDGGPEPDC NALFFDGKEV DGDAAYAEDT LNEELIAFDE TATDIAKDPF 120 AHFNVSLDSY INNPPISPVS LEVPTPVCSL ERVVPSMTCP STICTTGFYM VGDTGGLVDM 180 EDRAFVSVEY GASTSGGAHS MNFSGTPLNW DMVREGSIQP NAGKSQNQQF QCASCQILRR 240 IVHSNGGFYV VPSMANVRLT DHDEIVESTL LDIAAFDILQ LVLRLVGVAC CMRIQDTKLE 300 IHGCDGQSYH AVLQTRFCID DGFPASFEQQ MVEFLVANAE YVKHFLLQYS LLRRKEGFVL 360 QHDSLASHGS GGVGMGMSSE RVMGANGRCI SKQIGHIAPP EVLCNSSAYS SSGCTYGKAG 420 LKQDKFHGSG SIDSSDNADA SVGLVKPQKS NAAAQRERTG KLKMIDLAQH FHLPINAAAK 480 ELGICPTVLK KICRRNGMRR WPHRKIKSIE RIIATLEQTI AEGSGQGDEG IRLEIAMLRN 540 ERAQLCAGFS GDI*

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MASGLLESST CEEVVLDASN SPRFDINEFL KPPKDFNTDE QFFNFSAFNI PAPTGNMLTP  60
LPPLNIRRSG RSDGGPEPDC NALFFDGKEV DGDAAYAEDT LNEELIAFDE TATDIAKDPF  120
AHFNVSLDSY INNPPISPVS LEVPTPVCSL ERVVPSMTCP STICTTGFYM VGDTGGLVDM  180
EDRAFVSVEY GASTSGGAHS MNFSGTPLNW DMVREGSIQP NAGKSQNQQF QCASCQILRR  240
IVHSNGGFYV VPSMANVRLT DHDEIVESTL LDIAAFDILQ LVLRLVGVAC CMRIQDTKLE  300
IHGCDGQSYH AVLQTRFCID DGFPASFEQQ MVEFLVANAE YVKHFLLQYS LLRRKEGFVL  360
QHDSLASHGS GGVGMGMSSE RVMGANGRCI SKQIGHIAPP EVLCNSSAYS SSGCTYGKAG  420
LKQDKFHGSG SIDSSDNADA SVGLVKPQKS NAAAQRERTG KLKMIDLAQH FHLPINAAAK  480
ELGICPTVLK KICRRNGMRR WPHRKIKSIE RIIATLEQTI AEGSGQGDEG IRLEIAMLRN  540
ERAQLCAGFS GDI*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024363596.1	0.0	uncharacterized protein LOC112276464 isoform X1
TrEMBL	A9TZJ1	0.0	A9TZJ1_PHYPA; Predicted protein
STRING	PP1S387_8V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	3e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pp3c24_6460V3.3.p
Entrez Gene	5947230

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]