PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c24_7590V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 399aa    MW: 44250.2 Da    PI: 7.1991
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c24_7590V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.32.2e-3075128255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWt +LH++Fv ave+ GG+ekAtPk +l+ m+vkgLt++hvkSHLQ+YR+
  Pp3c24_7590V3.1.p  75 PRLRWTADLHHCFVVAVERCGGQEKATPKMVLQYMDVKGLTIAHVKSHLQMYRS 128
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.79771131IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2971130IPR009057Homeodomain-like
SuperFamilySSF466894.84E-1473131IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-2175129IPR006447Myb domain, plants
PfamPF002491.3E-676127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDFLGKQSST HDGDEVEKDF EGVAGSRTSP GASSDDLSSE SNTTSTTNAP DQSEKGSRRL  60
DSRGKVRQYV RSRLPRLRWT ADLHHCFVVA VERCGGQEKA TPKMVLQYMD VKGLTIAHVK  120
SHLQMYRSMK NDESLQSDLS LWRGSGKFQH HNNLWLHSSA ADSLNRSNHL FEQPSAGHRH  180
NATLISAKKQ LEAEWEVCRR EYDARVALMM LMDQSRVGNP RTPSDPNPTL SESPSHVQLM  240
KLLDGPAPRP LDRGSSYINI YNRFQSDSTN DQPDEVSKKS SQLVKLPPRE HDAAPQSYSS  300
EDLVSSLSLS RPHSWSVGHT APISQRSTTM ATEHVLLVDF LSPRVQSGGH GHHMEDGLKL  360
DLTMSTGSAS EPEYEASRSS YAKKVKLDLT LDLTMSTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-1576130458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-1576130458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-1576130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1576130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1576130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1576130357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-1576130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-1576130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-1576130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-1576130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-1576130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-1576130458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024363632.10.0protein PHOSPHATE STARVATION RESPONSE 3-like
TrEMBLA0A2K1IFX50.0A0A2K1IFX5_PHYPA; Uncharacterized protein
STRINGPP1S73_109V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-29G2-like family protein