PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c24_7690V3.2.p

Common Name

PHYPADRAFT_233209

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 335aa MW: 37198.5 Da PI: 7.4073

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c24_7690V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.5	5.3e-27	75	127	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prl+Wt +L ++F++a+e+LGG++kAtPk+il++m+v gL ++h+kSHLQ+YR Pp3c24_7690V3.2.p 75 PRLNWTDDLRRCFIRAIEELGGPQKATPKAILHTMNVSGLKIAHIKSHLQMYR 127 8**************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.685	71	131	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-25	71	128	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-21	75	128	IPR006447	Myb domain, plants
SuperFamily	SSF46689	8.06E-11	75	128	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-5	76	127	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MQGEDATDER GCWSASTGSP VRRCTSVDNS MPECSRVVES PVKSTATCMS APSALQCSNT 60 SSDGKTRRYV RSNVPRLNWT DDLRRCFIRA IEELGGPQKA TPKAILHTMN VSGLKIAHIK 120 SHLQMYRNPR SAKDSSPRFD LFRSNLQMQT TSRDSNCEVE GPWKSWEREA ATVETSYAKD 180 YYAESFTLGV STPVQLNHTG QCGGNFASLS PSQRNDVSIK PADARPASAS TISAHPNTYD 240 LLEMRIDGDN EQLASELMLA TRQRSQVEIS AAWNEQPRVQ SRDSRNDLTL SNAPLELTMS 300 LQPPQPHPDP YVRSEILTLD LTQQLNRPRL EPPR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.12868	0.0	protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024363341.1	0.0	uncharacterized protein LOC112276339
TrEMBL	A0A2K1IFY0	0.0	A0A2K1IFY0_PHYPA; Uncharacterized protein
STRING	PP1S73_118V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	6e-26	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c24_7690V3.2.p
Entrez Gene	5928313

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]