PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c25_1190V3.2.p
Common NamePHYPADRAFT_169663
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 422aa    MW: 47637.5 Da    PI: 8.6608
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c25_1190V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.83e-09320362148
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaia 48 
                        ++ykG+r +  +++WvAeIr+       +  +++lg++  +++Aa a++a
  Pp3c25_1190V3.2.p 320 PKYKGIRLR--NNKWVAEIRVaK-----TkIKVWLGSYTRKKDAALAYDA 362
                        79****976..58********55.....34******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.74E-11320362No hitNo description
SMARTSM003802.1E-9321384IPR001471AP2/ERF domain
PROSITE profilePS5103211.864321378IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-15321379IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-9321371IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MVESRRVRWK TRLNVFVWMK HLFDRKREEC DIYFVNLLFG SPTHTPSPTP PRTPTPTSPP  60
NPPRTSASAY GYAPAADCGH KAWTRGGQHD NEASCSNPSS LYFDPEFCAD YVEQHAIPSL  120
PQLRRSGMTV PAQTFESNLE TFHPRQGEEL FPNQGMSSSD AMSVDSSVVP NPIPRTYEAW  180
LHPYAVPNQY QQTSPTDCDI SVNDYVNECT DSEFTDATEI FSQSNCSYQV GHPSVSMMSV  240
DQVENIESLR DTGNSSTQSI QTQMMSQYVN FLERELGLAG TAKGRWRAIA YLVKNYSTLL  300
RSRRQNGASS SSIMGEEDSP KYKGIRLRNN KWVAEIRVAK TKIKVWLGSY TRKKDAALAY  360
DAGLHHCNQK KLKKFNFRES IQKLGASQYI NIIKLREEEM KTAVKKLAED HVKAYGSTNI  420
R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351372RKKDAALAYDAGLHHCNQKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365081.10.0uncharacterized protein LOC112277223
TrEMBLA9TER70.0A9TER7_PHYPA; Predicted protein
STRINGPP1S215_64V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.19e-12ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]