PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c25_13740V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 524aa    MW: 57645.4 Da    PI: 6.5541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c25_13740V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-08380421955
                         HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          r RR++i +++  L +l+P  +      K++ a++L +A+eY+k Lq
  Pp3c25_13740V3.1.p 380 ARHRRKKISERIRVLEKLIPGgN------KMDTATMLDEAIEYVKFLQ 421
                         699*****************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.399371420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-9374425No hitNo description
Gene3DG3DSA:4.10.280.101.6E-13376430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-14376432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-12377426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5381421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MMGDMHHVHG GIMPLDAPFS DDSRVHGCNS FTPAYQQLIP SHCAQTPISW SATDHAQLLN  60
EQIGGEPLNF WQAESCLQHS LQYSHAGYST LGQMEMLSSL NADPYNPSVS YEVSQLVQLY  120
STLYQDQYGY ANLSFVDPVT QPNILHGLSV QSEVTLPTSS DCLQVVSSSG SDSLSTTETW  180
RSETSGGCAP ANYENSLTNL NESSSVTLVR DSHDSNFQPH RQHQDVLKQD QAVTLLPFQE  240
PWIYNQSRTD IGRNSLQTSV ALSHDSESHE IISVASSSDI PKFKRPRTWD EALRQGSAQN  300
DLARYAVGSK SSLRIDSLQP SSLSRTIPSR HLSFQGKLSS FLLTGASGSS YSQRSCLQEE  360
GRSYNGKPVA TSVEPQSVAA RHRRKKISER IRVLEKLIPG GNKMDTATML DEAIEYVKFL  420
QLQVQILESN TLEDRPAIVP TDQILSLQGN MVHGLKRKRN TNLEGDSSTT LSLRAAASPL  480
ILSEVLQQQL FKQKLCLVSI SQCPPCTTST PPPIVAPSIR RKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365173.10.0uncharacterized protein LOC112277272
TrEMBLA0A2K1IER70.0A0A2K1IER7_PHYPA; Uncharacterized protein
STRINGPP1S57_219V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1676923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.12e-20bHLH family protein