PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c25_13850V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 647aa    MW: 72155.6 Da    PI: 8.281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c25_13850V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-10544591355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++h ++ErrRR + ++ f  Lr+l+P  +      K +Ka++L  A+ Y+k+Lq
  Pp3c25_13850V3.1.p 544 VNHMMAERRRRVKQKENFTALRKLVPIiS------KADKASTLGDAIIYLKELQ 591
                         5899***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-1824167IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.44E-14540606IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.424541590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-8544591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-11544595No hitNo description
Gene3DG3DSA:4.10.280.102.8E-15545609IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-9547596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MSSYPQVQIG ITGVPLEHQY QHIQRQLQNL LQQLRWSYVA LWSLSHLAPP QTRSLGWRGG  60
HFRVNSTEMT TNGAAEAWNE HLFKSTYQLC TFTPGLGSVG MAHAEGRNFW MNGSSVHLTA  120
GSMEQAQFLQ HAGIETAMCI PWSDSVLELG TTERVAEDPS LMERIRGFMT EIIPPALPDT  180
SQAQQNRFGG TSITEYSPFS CLSAAGDLPD NLNYQAFDSN SLNQQLRSVS PSARLATSEM  240
VLVKSDDSQV NYLKSHHCLD TGLLPDPAML RFPRASRSAS DILQMQHQVL PPASSNQFRG  300
RCRSHSSTTS PSASNLEGRF NTRLSNSPEN INTTFSRSRN SRSTTSSSSR RGTPSQGPEF  360
KLENTNTYTG LVPQLPRDDD EIQKVLTFMQ DGGESLGTHR EDWQDLYKSS LETENVMRET  420
YLPSSSGVRV EDGETELGSV SWQRTRAVGP ILDPRNDRRS PVLERKAARH CKEIPSLQQG  480
TQNSGAAGQQ QPVLTFSGAE TSTNTCRGQD AFYLGPLTDQ RRVRRVSRIA SLGPVNGAHE  540
DAAVNHMMAE RRRRVKQKEN FTALRKLVPI ISKADKASTL GDAIIYLKEL QMKIEELKAS  600
TTKTENRYKI LELSYYNLKK RNEELESITG DGDFSYTHPL RKNSYQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365176.10.0uncharacterized protein LOC112277275
TrEMBLA0A2K1IES50.0A0A2K1IES5_PHYPA; Uncharacterized protein
STRINGPP1S57_226V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.15e-15ABA-inducible BHLH-type transcription factor