PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c25_13850V3.2.p
Common NamePHYPADRAFT_76229
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 565aa    MW: 62856.1 Da    PI: 8.0759
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c25_13850V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-10462509355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++h ++ErrRR + ++ f  Lr+l+P  +      K +Ka++L  A+ Y+k+Lq
  Pp3c25_13850V3.2.p 462 VNHMMAERRRRVKQKENFTALRKLVPIiS------KADKASTLGDAIIYLKELQ 509
                         5899***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-91685IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.16E-14458524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.424459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.07E-11462513No hitNo description
PfamPF000104.5E-8462509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-15463527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-9465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MIRGTYPQWV ADTCRSVGMA HAEGRNFWMN GSSVHLTAGS MEQAQFLQHA GIETAMCIPW  60
SDSVLELGTT ERVAEDPSLM ERIRGFMTEI IPPALPDTSQ AQQNRFGGTS ITEYSPFSCL  120
SAAGDLPDNL NYQAFDSNSL NQQLRSVSPS ARLATSEMVL VKSDDSQVNY LKSHHCLDTG  180
LLPDPAMLRF PRASRSASDI LQMQHQVLPP ASSNQFRGRC RSHSSTTSPS ASNLEGRFNT  240
RLSNSPENIN TTFSRSRNSR STTSSSSRRG TPSQGPEFKL ENTNTYTGLV PQLPRDDDEI  300
QKVLTFMQDG GESLGTHRED WQDLYKSSLE TENVMRETYL PSSSGVRVED GETELGSVSW  360
QRTRAVGPIL DPRNDRRSPV LERKAARHCK EIPSLQQGTQ NSGAAGQQQP VLTFSGAETS  420
TNTCRGQDAF YLGPLTDQRR VRRVSRIASL GPVNGAHEDA AVNHMMAERR RRVKQKENFT  480
ALRKLVPIIS KADKASTLGD AIIYLKELQM KIEELKASTT KTENRYKILE LSYYNLKKRN  540
EELESITGDG DFSYTHPLRK NSYQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365176.10.0uncharacterized protein LOC112277275
TrEMBLA0A2K1IES50.0A0A2K1IES5_PHYPA; Uncharacterized protein
STRINGPP1S57_226V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.17e-15ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]