PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c25_5110V3.2.p

Common Name

PHYPADRAFT_100170

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 221aa MW: 24181.1 Da PI: 4.7978

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c25_5110V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00054	76	111	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + + ++ Lr++lP + +Ka+iL A +YI +Lq Pp3c25_5110V3.2.p 76 LDEQLSFLRSILPGT----TPGEEKASILMDAYQYIMKLQ 111 566777899999997....23479**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.4E-7	68	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-8	70	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	7.64E-5	173	206	No hit	No description
PROSITE profile	PS51671	9.499	174	220	IPR002912	ACT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MAHGNGSSSH NSGEGAEQHT REIDEEYFSE LDSADSENDE VPKAFETNIP RGSGKRTYGV 60 IVNDLHAERR LKNAKLDEQL SFLRSILPGT TPGEEKASIL MDAYQYIMKL QKCVDELNTE 120 LIPLSTASAN MSAGNLIVGS LQEAPDTQST RSASVCVSYQ HPMVEVKREE GKLEVHIACM 180 NRPGLLVDIM GALDSRRITV VHANIACREN AQLEALRLEV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024365200.1	1e-163	basic helix-loop-helix protein A-like
TrEMBL	A0A2K1IDU3	1e-162	A0A2K1IDU3_PHYPA; Uncharacterized protein
TrEMBL	A9U181	1e-161	A9U181_PHYPA; Predicted protein
STRING	PP1S412_42V6.1	1e-162	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12860.1	1e-17	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c25_5110V3.2.p
Entrez Gene	5947825

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]