PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_10830V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 522aa    MW: 57536.1 Da    PI: 6.6257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_10830V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.35e-074464851054
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR++i +++ +L+ l+P+      +K++ +++L +Av+Y++ L
  Pp3c26_10830V3.4.p 446 RARREKIAERLRKLQHLIPNG-----GKVDIVTMLDEAVHYVQFL 485
                         89*****************98.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.491436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-11438500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-11442496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-8442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.05E-8445489No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MCPVAVPSSV ASSCERLIWE GWTAQPSPVE ESTTSKLLPK LLPELETSSY SALTLQQPDA  60
LSSILSVLHP FSHYSSASLE LARNPDWSLK SSNPLRESSS EAGIRTSSFE GLYSGQHTTK  120
KIHLGVIPYH LSEDQRQCAV SPPENECRLL SANSSGSLHW WHSIGPESPS STLAFHNIGI  180
QHSTFEKCEP RGQSHSSWPA ASGTSPTVQY FHAHSADNEG VEVVKQDDSQ ISKALATYQP  240
HGDHSLVLNS DRIASTTSHS EDPCGPKPGR RPAASYDTEM ILSPSESFLT TPNMLSTLEC  300
VISGASNISD QYMNFVREPQ EQRLSSISDL SLIPDSHADP HSIGFISGTF RTDSHGTGIR  360
KNRIFLSDEE SDFLPKKRSK YTVRGDFQMD RFDAVWGNTG LRGSSCPGNS VSQMMAIYEF  420
GPALNRNGRP RVQRGSATDP QSVHARARRE KIAERLRKLQ HLIPNGGKVD IVTMLDEAVH  480
YVQFLKRQVT LLKSDEYWMY ATPTSYRSKF DDCSLVPGEN N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1563961e-107EF156396.1 Physcomitrella patens Rhd6-like 4 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366155.10.0uncharacterized protein LOC112277727 isoform X1
RefseqXP_024366156.10.0uncharacterized protein LOC112277727 isoform X1
RefseqXP_024366157.10.0uncharacterized protein LOC112277727 isoform X1
RefseqXP_024366158.10.0uncharacterized protein LOC112277727 isoform X1
TrEMBLA0A2K1ICK30.0A0A2K1ICK3_PHYPA; Uncharacterized protein
STRINGPP1S6_167V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-32bHLH family protein