PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_12270V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 408aa    MW: 42482.8 Da    PI: 8.6978
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_12270V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.8e-103959727
                        SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
                        +++++tGtCk+G++Ck++H++
  Pp3c26_12270V3.1.p 39 QYYLKTGTCKFGATCKYHHPR 59
                        59*****************96 PP
2zf-CCCH39.78.4e-1381105327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C +++rtG CkyG +CkF+H++
  Pp3c26_12270V3.1.p  81 EKECAYYMRTGSCKYGVTCKFHHPQ 105
                         689********************97 PP
3zf-CCCH36.39.4e-12236262127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+++++tG Ck+G +C+++H++
  Pp3c26_12270V3.1.p 236 PGQPECQYYMKTGDCKFGTTCRYHHPK 262
                         5789*********************96 PP
4zf-CCCH33.19.7e-11286307526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+f+ r+G+Ck+G++CkF H+
  Pp3c26_12270V3.1.p 286 PCSFYTRYGICKFGPTCKFDHP 307
                         8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.823759IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.7093960IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-73959IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-578105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.69578106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-679106IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-1081105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-584104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216235263IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5235262IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-9237262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6239264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4241262IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4281308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807281309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-5285307IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-8286307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MVGVRKRGRM GMWCGRWRED GVSGGRIDSW GCVGGGGVQY YLKTGTCKFG ATCKYHHPRE  60
KAGSTGRVLL NVLGLPLRLG EKECAYYMRT GSCKYGVTCK FHHPQPATVG GMVPVPFGSG  120
GGPSSPAPQG YAAGALPSWP LARSPYPLPR LQTHSSYGPM LPLQQGIMSM PGWSYQGPVG  180
PPDSHQQGYV FGGAPQGEHV SGYGPYVQGS SAVGLLAHQA TQSVGPQKES LFPERPGQPE  240
CQYYMKTGDC KFGTTCRYHH PKDRTTPSPT CHLSPIGLPL RPGNLPCSFY TRYGICKFGP  300
TCKFDHPLVG SFPYSMSAGS LADGPVATYP IGSSPMNLAP SAYSEGLLEQ QGSGEAGGYA  360
EDGIGHDVTS RSNSEGGGVS SGSGVNGGVG GAGSGSGPTQ AESVSKS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.97730.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366898.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF91e-95ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2K1ICS80.0A0A2K1ICS8_PHYPA; Uncharacterized protein
STRINGPP1S6_315V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.39e-75C3H family protein