PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_15770V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 52aa    MW: 6405.23 Da    PI: 10.8115
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_15770V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-073381547
                        HHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding 15 avkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                         v+++G+g+Wk+I +       +Rt+ ++k++w+++
  Pp3c26_15770V3.1.p  3 QVQEHGKGHWKKILNNNAnpfCRRTEVDLKDKWRNL 38
                        69*************99999989***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.727146IPR017930Myb domain
SuperFamilySSF466892.11E-9247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-7242IPR009057Homeodomain-like
CDDcd116601.87E-8440No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 52 aa     Download sequence    Send to blast
KRQVQEHGKG HWKKILNNNA NPFCRRTEVD LKDKWRNLEK YKNRDRDLQW N*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1ID648e-29A0A2K1ID64_PHYPA; Uncharacterized protein (Fragment)
STRINGPP1S471_2V6.16e-15(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.14e-09TRF-like 3