PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c26_700V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YC

Protein Properties

Length: 139aa MW: 15412.2 Da PI: 5.9669

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c26_700V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	28.7	2.8e-09	52	107	14	69
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeen 69 +++ ++P++r++++ k++ d++ + ea l++ka elf+ +l ++ + ++n Pp3c26_700V3.2.p 52 QNLLTLSFPISRVRRLAKSEGDIQWVGVEAGFLIAKATELFLEKLVEDAFGRMRDN 107 5666789**********************************988877666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.0E-13	56	117	IPR009072	Histone-fold
SuperFamily	SSF47113	4.19E-11	58	119	IPR009072	Histone-fold
Pfam	PF00808	4.3E-6	58	109	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MSTTNSESEV QRSYEDDERK ENGYSYEENG NKSENGTPAS WRASGKPGKS LQNLLTLSFP 60 ISRVRRLAKS EGDIQWVGVE AGFLIAKATE LFLEKLVEDA FGRMRDNRQA SILYPHLYIV 120 PVRIPAATAL QNASMADK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024366079.1	6e-94	putative transcription factor C16C4.22
TrEMBL	A0A2K1J3J8	2e-68	A0A2K1J3J8_PHYPA; Uncharacterized protein
STRING	PP1S149_89V6.1	4e-81	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8670	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-10	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Pp3c26_700V3.2.p