PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c26_8569V3.1.p

Common Name

PHYPADRAFT_91889

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

WOX

Protein Properties

Length: 221aa MW: 24191.2 Da PI: 9.8035

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c26_8569V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.1	1.2e-17	14	75	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R++ +++ql+ Le+ Fe+ ++p+++++++++ +l +++e++V++WFqNr+a+ k+ Pp3c26_8569V3.1.p 14 RSRWSANQQQLQNLESIFEQgnGNTPNKARIKDITIELnqfgHISETNVYNWFQNRKARAKR 75 89***************77689**********************************97 PP
2	Wus_type_Homeobox	81.4	1.1e-26	13	76	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGl.rtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+ +++Q++ Le+++++G tPnk++i++it eL+++G+i+++NV++WFQNrkaR ++k Pp3c26_8569V3.1.p 13 TRSRWSANQQQLQNLESIFEQGNgNTPNKARIKDITIELNQFGHISETNVYNWFQNRKARAKRK 76 689***************998358**********************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.84E-15	9	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.653	10	76	IPR001356	Homeobox domain
SMART	SM00389	9.1E-10	12	80	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.6E-12	13	79	IPR009057	Homeodomain-like
CDD	cd00086	1.50E-9	14	76	No hit	No description
Pfam	PF00046	2.3E-15	14	75	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MACEQRASTN PPTRSRWSAN QQQLQNLESI FEQGNGNTPN KARIKDITIE LNQFGHISET 60 NVYNWFQNRK ARAKRKLQQR VGRTRRLSCT ATGSTCKMRS GEAEISGDVQ PYLPDAKRLK 120 AVGPQSQSAT GSAATPASAL DAGSSIAAAE IDTELRSRPA LMPLTSITPL TMPLTVTRVE 180 AIEETLGGGA EHWHDQGLPV LLPPSLHGET SFIDYYRFRK *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024367047.1	1e-164	WUSCHEL-related homeobox 6-like
TrEMBL	A0A2K1ICB3	1e-163	A0A2K1ICB3_PHYPA; Uncharacterized protein
STRING	PP1S217_9V6.1	1e-164	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	2e-17	WUSCHEL related homeobox 14

Link Out ? help Back to Top
Phytozome	Pp3c26_8569V3.1.p
Entrez Gene	5940400

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]