PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c27_3280V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LBD

Protein Properties

Length: 245aa MW: 26671.1 Da PI: 8.734

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c27_3280V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	52.7	1.2e-16	2	94	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C++ C+l+p++ +++ ++ +v+k+FG++ ++ +++a+pe++ A+ r+ +P+ avg++++++++++q Pp3c27_3280V3.1.p 2 SCNGCRVLRKGCSETCILRPCLqwienMEAKGYATVFVAKFFGRAGLMGFISAMPEHQL---------MACGRTMNPMFVAVGLLWSGNWHVCQ 86 6*******************8877666777999**************999984.........59********************** PP DUF260 90 lkaelall 97 ++++++l Pp3c27_3280V3.1.p 87 AAVNTVLK 94 *9987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.777	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-12	2	91	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIENME AKGYATVFVA KFFGRAGLMG FISAMPEHQL 60 MACGRTMNPM FVAVGLLWSG NWHVCQAAVN TVLKGGSLSL LSLSICLLEN LSLSAPCFPA 120 IAKNGGLPFS STVRVDGPTQ MVFPLSLNAS EDNPFGRHTI SLGIGFPEAG GEESKERTRS 180 NFERITLDKS STIRTKKVCT YKGCAWLPGE SGPELKQYQW HLQPTVKCRM MNSQCLQMKP 240 SSSS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024375699.1	7e-68	uncharacterized protein LOC112282397
Refseq	XP_024375700.1	7e-68	uncharacterized protein LOC112282397
TrEMBL	A0A2K1IAH9	0.0	A0A2K1IAH9_PHYPA; Uncharacterized protein
STRING	PP1S54_261V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	9e-50	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Pp3c27_3280V3.1.p